Hb_001001_100

Information

Type -
Description -
Location Contig1001: 83783-90879
Sequence    

Annotation

kegg
ID zma:103630936
description uncharacterized LOC103630936
nr
ID XP_012092676.1
description PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5WVX0
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015897mg PE=4 SV=1
Gene Ontology
ID GO:0003824
description rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_100 0.0 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
2 Hb_003416_050 0.2439989284 - - -
3 Hb_002272_040 0.2694883699 - - hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
4 Hb_007044_100 0.2699385612 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
5 Hb_011861_060 0.2850270305 - - -
6 Hb_143629_140 0.2973607181 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_002157_130 0.3049204928 - - -
8 Hb_068804_040 0.3074536818 - - -
9 Hb_002016_010 0.3142403449 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
10 Hb_011249_050 0.3195223999 - - -
11 Hb_005389_170 0.3205469919 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
12 Hb_000220_210 0.320595118 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
13 Hb_000072_170 0.3206870021 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_032258_010 0.3225143898 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
15 Hb_003529_140 0.3226770467 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
16 Hb_113347_010 0.323083049 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
17 Hb_000297_150 0.3243654172 - - PREDICTED: uncharacterized protein LOC103500908 [Cucumis melo]
18 Hb_001832_040 0.3258829524 - - conserved hypothetical protein [Ricinus communis]
19 Hb_093458_060 0.3260970866 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
20 Hb_004241_020 0.326523664 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001001_100 Hb_001001_100 Hb_003416_050 Hb_003416_050 Hb_001001_100--Hb_003416_050 Hb_002272_040 Hb_002272_040 Hb_001001_100--Hb_002272_040 Hb_007044_100 Hb_007044_100 Hb_001001_100--Hb_007044_100 Hb_011861_060 Hb_011861_060 Hb_001001_100--Hb_011861_060 Hb_143629_140 Hb_143629_140 Hb_001001_100--Hb_143629_140 Hb_002157_130 Hb_002157_130 Hb_001001_100--Hb_002157_130 Hb_011030_030 Hb_011030_030 Hb_003416_050--Hb_011030_030 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_003416_050--Hb_002272_040 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_011639_080 Hb_011639_080 Hb_002272_040--Hb_011639_080 Hb_000243_090 Hb_000243_090 Hb_002272_040--Hb_000243_090 Hb_000028_120 Hb_000028_120 Hb_002272_040--Hb_000028_120 Hb_000613_040 Hb_000613_040 Hb_002272_040--Hb_000613_040 Hb_002552_020 Hb_002552_020 Hb_007044_100--Hb_002552_020 Hb_003910_050 Hb_003910_050 Hb_007044_100--Hb_003910_050 Hb_005917_030 Hb_005917_030 Hb_007044_100--Hb_005917_030 Hb_005695_080 Hb_005695_080 Hb_007044_100--Hb_005695_080 Hb_002235_100 Hb_002235_100 Hb_007044_100--Hb_002235_100 Hb_004502_010 Hb_004502_010 Hb_007044_100--Hb_004502_010 Hb_000270_330 Hb_000270_330 Hb_011861_060--Hb_000270_330 Hb_000072_170 Hb_000072_170 Hb_011861_060--Hb_000072_170 Hb_035273_010 Hb_035273_010 Hb_011861_060--Hb_035273_010 Hb_002374_230 Hb_002374_230 Hb_011861_060--Hb_002374_230 Hb_001269_650 Hb_001269_650 Hb_011861_060--Hb_001269_650 Hb_000742_170 Hb_000742_170 Hb_011861_060--Hb_000742_170 Hb_001832_040 Hb_001832_040 Hb_143629_140--Hb_001832_040 Hb_004108_060 Hb_004108_060 Hb_143629_140--Hb_004108_060 Hb_001472_160 Hb_001472_160 Hb_143629_140--Hb_001472_160 Hb_000349_240 Hb_000349_240 Hb_143629_140--Hb_000349_240 Hb_007192_090 Hb_007192_090 Hb_143629_140--Hb_007192_090 Hb_005211_020 Hb_005211_020 Hb_143629_140--Hb_005211_020 Hb_001369_610 Hb_001369_610 Hb_002157_130--Hb_001369_610 Hb_000679_050 Hb_000679_050 Hb_002157_130--Hb_000679_050 Hb_007416_050 Hb_007416_050 Hb_002157_130--Hb_007416_050 Hb_146673_010 Hb_146673_010 Hb_002157_130--Hb_146673_010 Hb_007533_010 Hb_007533_010 Hb_002157_130--Hb_007533_010 Hb_000300_080 Hb_000300_080 Hb_002157_130--Hb_000300_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0423043 0.0547333 0 0.0546145 0.0145657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0363957 0.0429586 0 0.0227499 0.0912564

CAGE analysis