Hb_068804_040

Information

Type -
Description -
Location Contig68804: 21180-22393
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_040 0.0 - - -
2 Hb_011249_050 0.1852988614 - - -
3 Hb_058722_010 0.2098998864 - - -
4 Hb_057098_010 0.2382508212 - - -
5 Hb_003416_050 0.2698393931 - - -
6 Hb_002546_020 0.2700729075 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
7 Hb_000098_290 0.2783005321 - - -
8 Hb_003813_160 0.2868780741 - - -
9 Hb_000679_060 0.2870092093 - - ADP,ATP carrier protein, putative [Ricinus communis]
10 Hb_001638_090 0.295407353 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
11 Hb_000010_250 0.2955206474 - - PREDICTED: protein tipD [Jatropha curcas]
12 Hb_011861_060 0.2960535217 - - -
13 Hb_001089_020 0.2969333393 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
14 Hb_000078_050 0.3034168965 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
15 Hb_001638_160 0.3060612294 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
16 Hb_000084_160 0.3062406354 - - SGNH hydrolase-type esterase superfamily protein, putative [Theobroma cacao]
17 Hb_001001_100 0.3074536818 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
18 Hb_000451_070 0.3078545595 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_001221_560 0.3096328145 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
20 Hb_002016_040 0.3096952256 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]

Gene co-expression network

sample Hb_068804_040 Hb_068804_040 Hb_011249_050 Hb_011249_050 Hb_068804_040--Hb_011249_050 Hb_058722_010 Hb_058722_010 Hb_068804_040--Hb_058722_010 Hb_057098_010 Hb_057098_010 Hb_068804_040--Hb_057098_010 Hb_003416_050 Hb_003416_050 Hb_068804_040--Hb_003416_050 Hb_002546_020 Hb_002546_020 Hb_068804_040--Hb_002546_020 Hb_000098_290 Hb_000098_290 Hb_068804_040--Hb_000098_290 Hb_011249_050--Hb_057098_010 Hb_011249_050--Hb_000098_290 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_000103_350 Hb_000103_350 Hb_058722_010--Hb_000103_350 Hb_080085_010 Hb_080085_010 Hb_058722_010--Hb_080085_010 Hb_003813_160 Hb_003813_160 Hb_058722_010--Hb_003813_160 Hb_058722_010--Hb_057098_010 Hb_037063_010 Hb_037063_010 Hb_057098_010--Hb_037063_010 Hb_001638_090 Hb_001638_090 Hb_057098_010--Hb_001638_090 Hb_005539_020 Hb_005539_020 Hb_057098_010--Hb_005539_020 Hb_057098_010--Hb_000098_290 Hb_000796_240 Hb_000796_240 Hb_057098_010--Hb_000796_240 Hb_001001_100 Hb_001001_100 Hb_003416_050--Hb_001001_100 Hb_011030_030 Hb_011030_030 Hb_003416_050--Hb_011030_030 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_002272_040 Hb_002272_040 Hb_003416_050--Hb_002272_040 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_011512_080 Hb_011512_080 Hb_002546_020--Hb_011512_080 Hb_000218_010 Hb_000218_010 Hb_002546_020--Hb_000218_010 Hb_004324_110 Hb_004324_110 Hb_002546_020--Hb_004324_110 Hb_001638_160 Hb_001638_160 Hb_002546_020--Hb_001638_160 Hb_008959_020 Hb_008959_020 Hb_002546_020--Hb_008959_020 Hb_001348_150 Hb_001348_150 Hb_002546_020--Hb_001348_150 Hb_000098_290--Hb_037063_010 Hb_000098_290--Hb_005539_020 Hb_002400_360 Hb_002400_360 Hb_000098_290--Hb_002400_360 Hb_010407_170 Hb_010407_170 Hb_000098_290--Hb_010407_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0682323 0.412917 0.0819624 0 0.36604 0.0478567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24956 0.392151 0 0.243569 0.185049

CAGE analysis