Hb_000028_120

Information

Type -
Description -
Location Contig28: 105971-106156
Sequence    

Annotation

kegg
ID osa:4332100
description Os03g0221800
nr
ID NP_001049416.2
description Os03g0221800 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID F6GSN6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02170 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase 11-interacting protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000028_120 0.0 - - Os03g0221800 [Oryza sativa Japonica Group]
2 Hb_002272_040 0.2986557416 - - hypothetical protein POPTR_0013s02610g, partial [Populus trichocarpa]
3 Hb_004354_010 0.2991440855 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
4 Hb_000200_320 0.3032376929 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
5 Hb_003041_060 0.3118853818 - - -
6 Hb_111722_010 0.3263558412 - - PREDICTED: uncharacterized protein LOC105634044 isoform X2 [Jatropha curcas]
7 Hb_003416_050 0.3295623705 - - -
8 Hb_001377_400 0.3330117036 - - neutral/alkaline invertase [Manihot esculenta]
9 Hb_003095_060 0.3330215735 - - hypothetical protein VITISV_030841 [Vitis vinifera]
10 Hb_000228_090 0.3394272317 - - PREDICTED: protein PAM68, chloroplastic [Jatropha curcas]
11 Hb_005649_020 0.3450583411 - - PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
12 Hb_005684_010 0.3456290176 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
13 Hb_000449_060 0.3473483589 - - -
14 Hb_002157_130 0.349619096 - - -
15 Hb_001001_100 0.3540489928 - - PREDICTED: uncharacterized protein LOC105650392 [Jatropha curcas]
16 Hb_002081_070 0.3614066919 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
17 Hb_005488_050 0.3638777927 - - PREDICTED: LOW QUALITY PROTEIN: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus]
18 Hb_001369_760 0.3653989802 - - hypothetical protein PRUPE_ppa019417mg [Prunus persica]
19 Hb_032202_180 0.3656899024 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
20 Hb_147090_010 0.3662309783 - - PREDICTED: tetraketide alpha-pyrone reductase 1-like [Malus domestica]

Gene co-expression network

sample Hb_000028_120 Hb_000028_120 Hb_002272_040 Hb_002272_040 Hb_000028_120--Hb_002272_040 Hb_004354_010 Hb_004354_010 Hb_000028_120--Hb_004354_010 Hb_000200_320 Hb_000200_320 Hb_000028_120--Hb_000200_320 Hb_003041_060 Hb_003041_060 Hb_000028_120--Hb_003041_060 Hb_111722_010 Hb_111722_010 Hb_000028_120--Hb_111722_010 Hb_003416_050 Hb_003416_050 Hb_000028_120--Hb_003416_050 Hb_011639_080 Hb_011639_080 Hb_002272_040--Hb_011639_080 Hb_001001_100 Hb_001001_100 Hb_002272_040--Hb_001001_100 Hb_000243_090 Hb_000243_090 Hb_002272_040--Hb_000243_090 Hb_002272_040--Hb_003416_050 Hb_000613_040 Hb_000613_040 Hb_002272_040--Hb_000613_040 Hb_002284_090 Hb_002284_090 Hb_004354_010--Hb_002284_090 Hb_000157_100 Hb_000157_100 Hb_004354_010--Hb_000157_100 Hb_002603_080 Hb_002603_080 Hb_004354_010--Hb_002603_080 Hb_001840_120 Hb_001840_120 Hb_004354_010--Hb_001840_120 Hb_000120_760 Hb_000120_760 Hb_004354_010--Hb_000120_760 Hb_004595_020 Hb_004595_020 Hb_004354_010--Hb_004595_020 Hb_037964_010 Hb_037964_010 Hb_000200_320--Hb_037964_010 Hb_000803_040 Hb_000803_040 Hb_000200_320--Hb_000803_040 Hb_004931_010 Hb_004931_010 Hb_000200_320--Hb_004931_010 Hb_000749_080 Hb_000749_080 Hb_000200_320--Hb_000749_080 Hb_000094_260 Hb_000094_260 Hb_000200_320--Hb_000094_260 Hb_019715_020 Hb_019715_020 Hb_003041_060--Hb_019715_020 Hb_003912_090 Hb_003912_090 Hb_003041_060--Hb_003912_090 Hb_001021_230 Hb_001021_230 Hb_003041_060--Hb_001021_230 Hb_000840_270 Hb_000840_270 Hb_003041_060--Hb_000840_270 Hb_029921_040 Hb_029921_040 Hb_003041_060--Hb_029921_040 Hb_023732_090 Hb_023732_090 Hb_003041_060--Hb_023732_090 Hb_003440_060 Hb_003440_060 Hb_111722_010--Hb_003440_060 Hb_000270_290 Hb_000270_290 Hb_111722_010--Hb_000270_290 Hb_000046_330 Hb_000046_330 Hb_111722_010--Hb_000046_330 Hb_002811_160 Hb_002811_160 Hb_111722_010--Hb_002811_160 Hb_000074_080 Hb_000074_080 Hb_111722_010--Hb_000074_080 Hb_004330_090 Hb_004330_090 Hb_111722_010--Hb_004330_090 Hb_003416_050--Hb_001001_100 Hb_011030_030 Hb_011030_030 Hb_003416_050--Hb_011030_030 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 3.18984 0 2.89437 2.12141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19252 1.71597 0 0.770453 1.78518

CAGE analysis