Hb_004354_010

Information

Type -
Description -
Location Contig4354: 9008-9720
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03150g
description hypothetical protein
nr
ID XP_006380965.1
description hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GBE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03150g PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42435: 9374-9746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004354_010 0.0 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
2 Hb_002284_090 0.2064498872 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
3 Hb_000157_100 0.2144537406 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
4 Hb_002603_080 0.2177599869 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
5 Hb_001840_120 0.2184881432 - - PREDICTED: uncharacterized protein LOC104228746 [Nicotiana sylvestris]
6 Hb_000120_760 0.2197584069 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
7 Hb_004595_020 0.2204119031 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
8 Hb_001105_190 0.2208890871 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
9 Hb_003057_050 0.2226477385 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
10 Hb_001278_110 0.2251344832 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
11 Hb_000015_210 0.2253958063 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
12 Hb_003095_060 0.2289746902 - - hypothetical protein VITISV_030841 [Vitis vinifera]
13 Hb_001021_230 0.2295740232 - - -
14 Hb_000270_360 0.2296533332 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
15 Hb_005306_170 0.2301234359 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
16 Hb_000840_270 0.2305798947 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
17 Hb_000563_210 0.2315450439 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
18 Hb_000486_010 0.2318647221 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
19 Hb_000742_080 0.232671027 - - -
20 Hb_000300_610 0.2327163285 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004354_010 Hb_004354_010 Hb_002284_090 Hb_002284_090 Hb_004354_010--Hb_002284_090 Hb_000157_100 Hb_000157_100 Hb_004354_010--Hb_000157_100 Hb_002603_080 Hb_002603_080 Hb_004354_010--Hb_002603_080 Hb_001840_120 Hb_001840_120 Hb_004354_010--Hb_001840_120 Hb_000120_760 Hb_000120_760 Hb_004354_010--Hb_000120_760 Hb_004595_020 Hb_004595_020 Hb_004354_010--Hb_004595_020 Hb_003398_130 Hb_003398_130 Hb_002284_090--Hb_003398_130 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_005016_050 Hb_005016_050 Hb_000157_100--Hb_005016_050 Hb_009117_030 Hb_009117_030 Hb_000157_100--Hb_009117_030 Hb_003688_060 Hb_003688_060 Hb_000157_100--Hb_003688_060 Hb_001054_130 Hb_001054_130 Hb_000157_100--Hb_001054_130 Hb_000364_150 Hb_000364_150 Hb_000157_100--Hb_000364_150 Hb_003912_090 Hb_003912_090 Hb_000157_100--Hb_003912_090 Hb_002603_080--Hb_001054_130 Hb_003922_010 Hb_003922_010 Hb_002603_080--Hb_003922_010 Hb_000567_030 Hb_000567_030 Hb_002603_080--Hb_000567_030 Hb_000317_410 Hb_000317_410 Hb_002603_080--Hb_000317_410 Hb_002603_080--Hb_000157_100 Hb_007317_180 Hb_007317_180 Hb_002603_080--Hb_007317_180 Hb_001840_120--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_001840_120--Hb_011139_020 Hb_012515_010 Hb_012515_010 Hb_001840_120--Hb_012515_010 Hb_000465_060 Hb_000465_060 Hb_001840_120--Hb_000465_060 Hb_000928_240 Hb_000928_240 Hb_001840_120--Hb_000928_240 Hb_025193_050 Hb_025193_050 Hb_001840_120--Hb_025193_050 Hb_032202_090 Hb_032202_090 Hb_000120_760--Hb_032202_090 Hb_001604_080 Hb_001604_080 Hb_000120_760--Hb_001604_080 Hb_168054_010 Hb_168054_010 Hb_000120_760--Hb_168054_010 Hb_000120_760--Hb_000887_020 Hb_010180_020 Hb_010180_020 Hb_000120_760--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000120_760--Hb_000676_290 Hb_004595_020--Hb_012515_010 Hb_004595_020--Hb_011139_020 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_004595_020--Hb_025193_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.287833 0 0.421135 0 0.498626 0.883696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04905 0.686651 0.224334 0.232563 0.246791

CAGE analysis