Hb_003688_060

Information

Type -
Description -
Location Contig3688: 40551-47065
Sequence    

Annotation

kegg
ID rcu:RCOM_1469870
description histone deacetylase hda1, putative
nr
ID XP_012080374.1
description PREDICTED: histone deacetylase 5 [Jatropha curcas]
swissprot
ID Q8RX28
description Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=1 SV=1
trembl
ID A0A067K5E5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11718 PE=4 SV=1
Gene Ontology
ID GO:0016787
description histone deacetylase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37965: 40491-47048 , PASA_asmbl_37966: 40491-47044
cDNA
(Sanger)
(ID:Location)		 053_M17.ab1: 40491-42909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_060 0.0 - - PREDICTED: histone deacetylase 5 [Jatropha curcas]
2 Hb_000617_260 0.1355670482 rubber biosynthesis Gene Name: SRPP2 small rubber particle protein [Hevea brasiliensis]
3 Hb_007317_180 0.141142386 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
4 Hb_002027_070 0.1449290864 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
5 Hb_001279_140 0.1471524945 - - PREDICTED: cystinosin homolog [Jatropha curcas]
6 Hb_000157_100 0.147463757 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
7 Hb_005016_050 0.1480045336 - - -
8 Hb_000580_190 0.1510556186 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
9 Hb_000162_170 0.1536557029 - - PREDICTED: uncharacterized protein At2g29880-like [Jatropha curcas]
10 Hb_000057_200 0.1571268529 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
11 Hb_008322_010 0.1586233328 - - PREDICTED: DNA repair protein RAD51 homolog 3 [Jatropha curcas]
12 Hb_004970_110 0.1588579747 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
13 Hb_000364_150 0.1594138157 - - -
14 Hb_002660_050 0.1604689111 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
15 Hb_000500_090 0.1604712575 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
16 Hb_004899_050 0.1607902104 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
17 Hb_003697_030 0.1608524382 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
18 Hb_012305_050 0.1609044898 - - unnamed protein product [Coffea canephora]
19 Hb_005117_010 0.161148482 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
20 Hb_007254_040 0.1629727175 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003688_060 Hb_003688_060 Hb_000617_260 Hb_000617_260 Hb_003688_060--Hb_000617_260 Hb_007317_180 Hb_007317_180 Hb_003688_060--Hb_007317_180 Hb_002027_070 Hb_002027_070 Hb_003688_060--Hb_002027_070 Hb_001279_140 Hb_001279_140 Hb_003688_060--Hb_001279_140 Hb_000157_100 Hb_000157_100 Hb_003688_060--Hb_000157_100 Hb_005016_050 Hb_005016_050 Hb_003688_060--Hb_005016_050 Hb_000041_050 Hb_000041_050 Hb_000617_260--Hb_000041_050 Hb_000029_020 Hb_000029_020 Hb_000617_260--Hb_000029_020 Hb_000656_110 Hb_000656_110 Hb_000617_260--Hb_000656_110 Hb_000700_110 Hb_000700_110 Hb_000617_260--Hb_000700_110 Hb_001833_110 Hb_001833_110 Hb_000617_260--Hb_001833_110 Hb_000898_050 Hb_000898_050 Hb_000617_260--Hb_000898_050 Hb_004970_110 Hb_004970_110 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_002027_070--Hb_004970_110 Hb_027472_150 Hb_027472_150 Hb_002027_070--Hb_027472_150 Hb_006114_030 Hb_006114_030 Hb_002027_070--Hb_006114_030 Hb_003673_060 Hb_003673_060 Hb_002027_070--Hb_003673_060 Hb_000500_090 Hb_000500_090 Hb_002027_070--Hb_000500_090 Hb_001472_120 Hb_001472_120 Hb_001279_140--Hb_001472_120 Hb_000003_480 Hb_000003_480 Hb_001279_140--Hb_000003_480 Hb_000057_200 Hb_000057_200 Hb_001279_140--Hb_000057_200 Hb_000421_210 Hb_000421_210 Hb_001279_140--Hb_000421_210 Hb_000260_220 Hb_000260_220 Hb_001279_140--Hb_000260_220 Hb_000395_080 Hb_000395_080 Hb_001279_140--Hb_000395_080 Hb_000157_100--Hb_005016_050 Hb_009117_030 Hb_009117_030 Hb_000157_100--Hb_009117_030 Hb_001054_130 Hb_001054_130 Hb_000157_100--Hb_001054_130 Hb_000364_150 Hb_000364_150 Hb_000157_100--Hb_000364_150 Hb_003912_090 Hb_003912_090 Hb_000157_100--Hb_003912_090 Hb_005016_050--Hb_009117_030 Hb_023732_090 Hb_023732_090 Hb_005016_050--Hb_023732_090 Hb_005016_050--Hb_027472_150 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3845 13.1809 10.7886 28.8107 55.0538 91.5636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.724 35.3438 52.9195 53.5669 16.9334

CAGE analysis