Hb_002603_080

Information

Type -
Description -
Location Contig2603: 43463-45776
Sequence    

Annotation

kegg
ID mtr:MTR_7g114400
description hypothetical protein
nr
ID XP_003626376.1
description hypothetical protein MTR_7g114400 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID K7L9V2
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016787
description intracellular protease family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_080 0.0 - - hypothetical protein MTR_7g114400 [Medicago truncatula]
2 Hb_001054_130 0.1594877445 - - Protein SSU72, putative [Ricinus communis]
3 Hb_003922_010 0.1638636446 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
4 Hb_000567_030 0.1656736885 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
5 Hb_000317_410 0.1657744916 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
6 Hb_000157_100 0.1679591644 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
7 Hb_007317_180 0.1730730292 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
8 Hb_001688_020 0.175732515 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
9 Hb_022461_010 0.1785440516 - - -
10 Hb_001009_250 0.1786749726 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
11 Hb_005056_060 0.178867346 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
12 Hb_000076_120 0.1813905855 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
13 Hb_004970_110 0.1815951 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
14 Hb_005306_170 0.1824204341 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_007254_040 0.1833500497 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
16 Hb_021056_020 0.1843589916 - - plasma membrane H+-ATPase [Hevea brasiliensis]
17 Hb_003266_050 0.1848482648 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
18 Hb_000326_050 0.1849320925 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
19 Hb_000061_320 0.1865432689 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
20 Hb_007017_090 0.1865456809 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_080 Hb_002603_080 Hb_001054_130 Hb_001054_130 Hb_002603_080--Hb_001054_130 Hb_003922_010 Hb_003922_010 Hb_002603_080--Hb_003922_010 Hb_000567_030 Hb_000567_030 Hb_002603_080--Hb_000567_030 Hb_000317_410 Hb_000317_410 Hb_002603_080--Hb_000317_410 Hb_000157_100 Hb_000157_100 Hb_002603_080--Hb_000157_100 Hb_007317_180 Hb_007317_180 Hb_002603_080--Hb_007317_180 Hb_004055_140 Hb_004055_140 Hb_001054_130--Hb_004055_140 Hb_022461_010 Hb_022461_010 Hb_001054_130--Hb_022461_010 Hb_000157_030 Hb_000157_030 Hb_001054_130--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_001054_130--Hb_003266_050 Hb_000057_200 Hb_000057_200 Hb_001054_130--Hb_000057_200 Hb_009117_030 Hb_009117_030 Hb_001054_130--Hb_009117_030 Hb_000212_330 Hb_000212_330 Hb_003922_010--Hb_000212_330 Hb_003226_140 Hb_003226_140 Hb_003922_010--Hb_003226_140 Hb_000468_060 Hb_000468_060 Hb_003922_010--Hb_000468_060 Hb_002303_070 Hb_002303_070 Hb_003922_010--Hb_002303_070 Hb_001662_150 Hb_001662_150 Hb_003922_010--Hb_001662_150 Hb_004127_030 Hb_004127_030 Hb_003922_010--Hb_004127_030 Hb_005056_060 Hb_005056_060 Hb_000567_030--Hb_005056_060 Hb_004108_080 Hb_004108_080 Hb_000567_030--Hb_004108_080 Hb_005389_150 Hb_005389_150 Hb_000567_030--Hb_005389_150 Hb_000086_380 Hb_000086_380 Hb_000567_030--Hb_000086_380 Hb_000003_080 Hb_000003_080 Hb_000567_030--Hb_000003_080 Hb_000567_030--Hb_003266_050 Hb_001688_020 Hb_001688_020 Hb_000317_410--Hb_001688_020 Hb_002333_080 Hb_002333_080 Hb_000317_410--Hb_002333_080 Hb_001824_010 Hb_001824_010 Hb_000317_410--Hb_001824_010 Hb_181600_010 Hb_181600_010 Hb_000317_410--Hb_181600_010 Hb_000318_100 Hb_000318_100 Hb_000317_410--Hb_000318_100 Hb_000329_650 Hb_000329_650 Hb_000317_410--Hb_000329_650 Hb_005016_050 Hb_005016_050 Hb_000157_100--Hb_005016_050 Hb_000157_100--Hb_009117_030 Hb_003688_060 Hb_003688_060 Hb_000157_100--Hb_003688_060 Hb_000157_100--Hb_001054_130 Hb_000364_150 Hb_000364_150 Hb_000157_100--Hb_000364_150 Hb_003912_090 Hb_003912_090 Hb_000157_100--Hb_003912_090 Hb_004970_110 Hb_004970_110 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.380257 0.109281 0.45129 0.0773395 0.255873 0.848547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19091 0.467746 0.390905 0.635977 0.215439

CAGE analysis