Hb_000120_760

Information

Type transcription factor
Description TF Family: HMG
Location Contig120: 609383-610772
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10440g
description hypothetical protein
nr
ID XP_011022174.1
description PREDICTED: HMG1/2-like protein [Populus euphratica]
swissprot
ID P40619
description HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1
trembl
ID B9H672
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s10440g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06200: 609384-610784
cDNA
(Sanger)
(ID:Location)		 019_K08.ab1: 609386-610784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_760 0.0 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
2 Hb_032202_090 0.0846969897 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
3 Hb_001604_080 0.087990643 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
4 Hb_168054_010 0.0901415534 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
5 Hb_000887_020 0.0903495586 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
6 Hb_010180_020 0.0907602587 - - hypothetical protein glysoja_030394 [Glycine soja]
7 Hb_000676_290 0.0912296424 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
8 Hb_000317_340 0.0916934803 - - conserved hypothetical protein [Ricinus communis]
9 Hb_024682_010 0.0927969865 - - sterol isomerase, putative [Ricinus communis]
10 Hb_001278_110 0.0939746634 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
11 Hb_128048_010 0.0975607748 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
12 Hb_000815_040 0.0995426869 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
13 Hb_000877_020 0.0996411704 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
14 Hb_010407_040 0.100262835 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
15 Hb_002411_170 0.1002919613 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
16 Hb_003126_090 0.1005400196 - - Rop1 [Hevea brasiliensis]
17 Hb_000505_140 0.1008842256 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
18 Hb_001328_040 0.1008851954 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
19 Hb_004204_120 0.1010731716 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
20 Hb_001936_080 0.101299393 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_760 Hb_000120_760 Hb_032202_090 Hb_032202_090 Hb_000120_760--Hb_032202_090 Hb_001604_080 Hb_001604_080 Hb_000120_760--Hb_001604_080 Hb_168054_010 Hb_168054_010 Hb_000120_760--Hb_168054_010 Hb_000887_020 Hb_000887_020 Hb_000120_760--Hb_000887_020 Hb_010180_020 Hb_010180_020 Hb_000120_760--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000120_760--Hb_000676_290 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_168054_010--Hb_010180_020 Hb_001369_660 Hb_001369_660 Hb_168054_010--Hb_001369_660 Hb_001314_100 Hb_001314_100 Hb_168054_010--Hb_001314_100 Hb_168054_010--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_168054_010--Hb_003687_110 Hb_165132_010 Hb_165132_010 Hb_168054_010--Hb_165132_010 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_010180_020--Hb_000815_040 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_005398_030 Hb_005398_030 Hb_000676_290--Hb_005398_030 Hb_000676_290--Hb_010180_020 Hb_071130_030 Hb_071130_030 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
121.73 24.7759 107.897 79.545 129.869 210.104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
257.968 244.919 117.296 56.1114 61.4561

CAGE analysis