Hb_019715_020

Information

Type -
Description -
Location Contig19715: 10872-11827
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G1213001
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019715_020 0.0 - - -
2 Hb_003041_060 0.1731803304 - - -
3 Hb_001021_230 0.1959969102 - - -
4 Hb_000268_020 0.2002979209 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015807_010 0.2171477421 - - hypothetical protein POPTR_0001s44430g [Populus trichocarpa]
6 Hb_025299_010 0.2236994796 - - hypothetical protein JCGZ_01062 [Jatropha curcas]
7 Hb_000529_100 0.2241944967 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
8 Hb_000065_080 0.2256301194 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
9 Hb_003544_090 0.2291022964 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
10 Hb_000621_060 0.2323969723 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
11 Hb_000342_080 0.2344139542 - - hypothetical protein L484_019524 [Morus notabilis]
12 Hb_009775_050 0.2351946433 transcription factor TF Family: Orphans hypothetical protein RCOM_0575190 [Ricinus communis]
13 Hb_032496_030 0.2363482365 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
14 Hb_002301_280 0.2383598092 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
15 Hb_000003_090 0.2388760469 - - -
16 Hb_029921_010 0.2392493958 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
17 Hb_002067_020 0.2392959547 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000157_100 0.2394234764 - - hypothetical protein B456_007G083500 [Gossypium raimondii]
19 Hb_002851_060 0.2403594152 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
20 Hb_000627_030 0.2407529323 - - amine oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_019715_020 Hb_019715_020 Hb_003041_060 Hb_003041_060 Hb_019715_020--Hb_003041_060 Hb_001021_230 Hb_001021_230 Hb_019715_020--Hb_001021_230 Hb_000268_020 Hb_000268_020 Hb_019715_020--Hb_000268_020 Hb_015807_010 Hb_015807_010 Hb_019715_020--Hb_015807_010 Hb_025299_010 Hb_025299_010 Hb_019715_020--Hb_025299_010 Hb_000529_100 Hb_000529_100 Hb_019715_020--Hb_000529_100 Hb_003912_090 Hb_003912_090 Hb_003041_060--Hb_003912_090 Hb_003041_060--Hb_001021_230 Hb_000840_270 Hb_000840_270 Hb_003041_060--Hb_000840_270 Hb_029921_040 Hb_029921_040 Hb_003041_060--Hb_029921_040 Hb_023732_090 Hb_023732_090 Hb_003041_060--Hb_023732_090 Hb_008578_010 Hb_008578_010 Hb_001021_230--Hb_008578_010 Hb_000621_060 Hb_000621_060 Hb_001021_230--Hb_000621_060 Hb_000065_080 Hb_000065_080 Hb_001021_230--Hb_000065_080 Hb_003544_090 Hb_003544_090 Hb_001021_230--Hb_003544_090 Hb_007632_250 Hb_007632_250 Hb_001021_230--Hb_007632_250 Hb_000270_360 Hb_000270_360 Hb_001021_230--Hb_000270_360 Hb_009775_050 Hb_009775_050 Hb_000268_020--Hb_009775_050 Hb_001329_230 Hb_001329_230 Hb_000268_020--Hb_001329_230 Hb_002027_070 Hb_002027_070 Hb_000268_020--Hb_002027_070 Hb_000627_030 Hb_000627_030 Hb_000268_020--Hb_000627_030 Hb_003673_060 Hb_003673_060 Hb_000268_020--Hb_003673_060 Hb_002301_280 Hb_002301_280 Hb_000268_020--Hb_002301_280 Hb_029510_140 Hb_029510_140 Hb_015807_010--Hb_029510_140 Hb_001518_040 Hb_001518_040 Hb_015807_010--Hb_001518_040 Hb_028900_020 Hb_028900_020 Hb_015807_010--Hb_028900_020 Hb_009543_030 Hb_009543_030 Hb_015807_010--Hb_009543_030 Hb_000175_070 Hb_000175_070 Hb_015807_010--Hb_000175_070 Hb_007632_090 Hb_007632_090 Hb_015807_010--Hb_007632_090 Hb_001675_060 Hb_001675_060 Hb_025299_010--Hb_001675_060 Hb_005016_150 Hb_005016_150 Hb_025299_010--Hb_005016_150 Hb_001477_010 Hb_001477_010 Hb_025299_010--Hb_001477_010 Hb_004669_040 Hb_004669_040 Hb_025299_010--Hb_004669_040 Hb_004607_120 Hb_004607_120 Hb_025299_010--Hb_004607_120 Hb_004243_010 Hb_004243_010 Hb_000529_100--Hb_004243_010 Hb_000529_100--Hb_003041_060 Hb_004712_180 Hb_004712_180 Hb_000529_100--Hb_004712_180 Hb_005054_070 Hb_005054_070 Hb_000529_100--Hb_005054_070 Hb_000048_090 Hb_000048_090 Hb_000529_100--Hb_000048_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.370786 0 0.139755 0.0758361 0.388992 0.789235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.542194 0.319462 0 0.221468 0.198806

CAGE analysis