Hb_004607_120

Information

Type -
Description -
Location Contig4607: 73602-79941
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20450g
description POPTRDRAFT_813758; zinc finger family protein
nr
ID XP_012089967.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
swissprot
ID A3BDI8
description Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1
trembl
ID A0A067JE11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25898 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43716: 73701-79559 , PASA_asmbl_43717: 73469-79559 , PASA_asmbl_43720: 73774-74083 , PASA_asmbl_43721: 76851-77283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_120 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
2 Hb_044662_040 0.0892508475 - - -
3 Hb_002863_010 0.1161638853 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_004502_030 0.1178236332 - - unknown [Populus trichocarpa]
5 Hb_007632_250 0.1190002014 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002235_150 0.1225721621 - - -
7 Hb_000622_100 0.1230857413 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
8 Hb_001623_580 0.1240132443 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
9 Hb_119583_010 0.126426213 - - 60S ribosomal protein L12A [Hevea brasiliensis]
10 Hb_003633_130 0.1268203619 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
11 Hb_171554_090 0.1270668655 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
12 Hb_006261_040 0.1272719043 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
13 Hb_002851_060 0.1312245728 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
14 Hb_000197_040 0.1320245777 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
15 Hb_003911_040 0.1348344385 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
16 Hb_033642_020 0.1350114636 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
17 Hb_000621_060 0.1350812553 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
18 Hb_007992_030 0.1362564137 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
19 Hb_000258_410 0.1365090242 - - PREDICTED: uncharacterized protein LOC105630409 [Jatropha curcas]
20 Hb_001504_170 0.1369655084 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004607_120 Hb_004607_120 Hb_044662_040 Hb_044662_040 Hb_004607_120--Hb_044662_040 Hb_002863_010 Hb_002863_010 Hb_004607_120--Hb_002863_010 Hb_004502_030 Hb_004502_030 Hb_004607_120--Hb_004502_030 Hb_007632_250 Hb_007632_250 Hb_004607_120--Hb_007632_250 Hb_002235_150 Hb_002235_150 Hb_004607_120--Hb_002235_150 Hb_000622_100 Hb_000622_100 Hb_004607_120--Hb_000622_100 Hb_002851_060 Hb_002851_060 Hb_044662_040--Hb_002851_060 Hb_044662_040--Hb_004502_030 Hb_005271_070 Hb_005271_070 Hb_044662_040--Hb_005271_070 Hb_044662_040--Hb_007632_250 Hb_000977_140 Hb_000977_140 Hb_044662_040--Hb_000977_140 Hb_023675_010 Hb_023675_010 Hb_002863_010--Hb_023675_010 Hb_000175_520 Hb_000175_520 Hb_002863_010--Hb_000175_520 Hb_012395_100 Hb_012395_100 Hb_002863_010--Hb_012395_100 Hb_007625_020 Hb_007625_020 Hb_002863_010--Hb_007625_020 Hb_000366_100 Hb_000366_100 Hb_002863_010--Hb_000366_100 Hb_000847_070 Hb_000847_070 Hb_004502_030--Hb_000847_070 Hb_007992_030 Hb_007992_030 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_119583_010 Hb_119583_010 Hb_007632_250--Hb_119583_010 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_003106_130 Hb_003106_130 Hb_002235_150--Hb_003106_130 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002408_010 Hb_002408_010 Hb_002235_150--Hb_002408_010 Hb_003120_060 Hb_003120_060 Hb_002235_150--Hb_003120_060 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010 Hb_000622_100--Hb_007632_250 Hb_011174_010 Hb_011174_010 Hb_000622_100--Hb_011174_010 Hb_073367_010 Hb_073367_010 Hb_000622_100--Hb_073367_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000622_100--Hb_000617_320 Hb_000622_100--Hb_119583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.624 5.32369 3.98606 5.30326 46.0923 46.2804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.481 30.4534 4.78254 4.4173 3.58105

CAGE analysis