Hb_000094_260

Information

Type -
Description -
Location Contig94: 202069-204209
Sequence    

Annotation

kegg
ID rcu:RCOM_1593960
description hypothetical protein
nr
ID XP_002510366.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R7S4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1593960 PE=4 SV=1
Gene Ontology
ID GO:0048868
description duf620 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000094_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007416_040 0.2084384608 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_005222_020 0.2128736797 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_000003_770 0.2279651315 - - -
5 Hb_001379_130 0.2291961757 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
6 Hb_039305_010 0.2454441431 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
7 Hb_000275_010 0.2467537498 - - -
8 Hb_001257_020 0.2512634014 - - -
9 Hb_000270_150 0.2557627069 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_088496_010 0.2557730954 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
11 Hb_000067_020 0.2601729732 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
12 Hb_148262_020 0.2610020982 - - -
13 Hb_001865_110 0.2625391281 - - -
14 Hb_000736_010 0.2671381779 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
15 Hb_004297_030 0.2699898704 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
16 Hb_000175_580 0.2707126048 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
17 Hb_007913_040 0.2724887256 - - sterol desaturase, putative [Ricinus communis]
18 Hb_000348_040 0.2765166141 - - -
19 Hb_002272_190 0.2768001714 - - Kinesin heavy chain, putative [Ricinus communis]
20 Hb_015401_010 0.2774930436 - - hypothetical protein VITISV_001548 [Vitis vinifera]

Gene co-expression network

sample Hb_000094_260 Hb_000094_260 Hb_007416_040 Hb_007416_040 Hb_000094_260--Hb_007416_040 Hb_005222_020 Hb_005222_020 Hb_000094_260--Hb_005222_020 Hb_000003_770 Hb_000003_770 Hb_000094_260--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_000094_260--Hb_001379_130 Hb_039305_010 Hb_039305_010 Hb_000094_260--Hb_039305_010 Hb_000275_010 Hb_000275_010 Hb_000094_260--Hb_000275_010 Hb_000123_200 Hb_000123_200 Hb_007416_040--Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_007416_040--Hb_160366_010 Hb_002272_190 Hb_002272_190 Hb_007416_040--Hb_002272_190 Hb_011349_010 Hb_011349_010 Hb_007416_040--Hb_011349_010 Hb_001865_110 Hb_001865_110 Hb_007416_040--Hb_001865_110 Hb_005222_020--Hb_001865_110 Hb_005222_020--Hb_000275_010 Hb_005222_020--Hb_001379_130 Hb_005222_020--Hb_000003_770 Hb_000501_020 Hb_000501_020 Hb_005222_020--Hb_000501_020 Hb_000736_010 Hb_000736_010 Hb_005222_020--Hb_000736_010 Hb_000003_770--Hb_001379_130 Hb_088496_010 Hb_088496_010 Hb_000003_770--Hb_088496_010 Hb_001257_020 Hb_001257_020 Hb_000003_770--Hb_001257_020 Hb_004297_030 Hb_004297_030 Hb_000003_770--Hb_004297_030 Hb_012324_020 Hb_012324_020 Hb_000003_770--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_000003_770--Hb_094721_010 Hb_001379_130--Hb_001257_020 Hb_001379_130--Hb_088496_010 Hb_001379_130--Hb_012324_020 Hb_001379_130--Hb_094721_010 Hb_001379_130--Hb_004297_030 Hb_000067_020 Hb_000067_020 Hb_039305_010--Hb_000067_020 Hb_000979_050 Hb_000979_050 Hb_039305_010--Hb_000979_050 Hb_039305_010--Hb_000736_010 Hb_008092_140 Hb_008092_140 Hb_039305_010--Hb_008092_140 Hb_003773_030 Hb_003773_030 Hb_039305_010--Hb_003773_030 Hb_159085_010 Hb_159085_010 Hb_039305_010--Hb_159085_010 Hb_005199_010 Hb_005199_010 Hb_000275_010--Hb_005199_010 Hb_109578_010 Hb_109578_010 Hb_000275_010--Hb_109578_010 Hb_002741_030 Hb_002741_030 Hb_000275_010--Hb_002741_030 Hb_145890_010 Hb_145890_010 Hb_000275_010--Hb_145890_010 Hb_001186_050 Hb_001186_050 Hb_000275_010--Hb_001186_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0599615 0.0161207 0.0180313 0.102689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439918 0.311426 0 0 0

CAGE analysis