Hb_007416_040

Information

Type -
Description -
Location Contig7416: 21208-27226
Sequence    

Annotation

kegg
ID rcu:RCOM_0919920
description glutamate receptor 2 plant, putative
nr
ID XP_002515378.1
description glutamate receptor 2 plant, putative [Ricinus communis]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID B9RNQ9
description Glutamate receptor OS=Ricinus communis GN=RCOM_0919920 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007416_040 0.0 - - glutamate receptor 2 plant, putative [Ricinus communis]
2 Hb_000123_200 0.1977033578 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
3 Hb_160366_010 0.198939743 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
4 Hb_000094_260 0.2084384608 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002272_190 0.2189683879 - - Kinesin heavy chain, putative [Ricinus communis]
6 Hb_011349_010 0.2509860847 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
7 Hb_001865_110 0.2563417559 - - -
8 Hb_005222_020 0.2587313814 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_002099_010 0.2692823996 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
10 Hb_001136_120 0.2727606835 - - -
11 Hb_000175_580 0.2811827497 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
12 Hb_141408_010 0.2866245561 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
13 Hb_156554_010 0.2945319972 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
14 Hb_001257_020 0.3110174348 - - -
15 Hb_001379_130 0.3123229955 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
16 Hb_092449_010 0.3167618849 - - -
17 Hb_000003_770 0.3171879509 - - -
18 Hb_148262_020 0.3271436771 - - -
19 Hb_001529_070 0.3303444853 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
20 Hb_000200_320 0.3326230954 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]

Gene co-expression network

sample Hb_007416_040 Hb_007416_040 Hb_000123_200 Hb_000123_200 Hb_007416_040--Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_007416_040--Hb_160366_010 Hb_000094_260 Hb_000094_260 Hb_007416_040--Hb_000094_260 Hb_002272_190 Hb_002272_190 Hb_007416_040--Hb_002272_190 Hb_011349_010 Hb_011349_010 Hb_007416_040--Hb_011349_010 Hb_001865_110 Hb_001865_110 Hb_007416_040--Hb_001865_110 Hb_000123_200--Hb_160366_010 Hb_002099_010 Hb_002099_010 Hb_000123_200--Hb_002099_010 Hb_000123_200--Hb_011349_010 Hb_000175_580 Hb_000175_580 Hb_000123_200--Hb_000175_580 Hb_156554_010 Hb_156554_010 Hb_000123_200--Hb_156554_010 Hb_160366_010--Hb_002099_010 Hb_160366_010--Hb_000175_580 Hb_160366_010--Hb_011349_010 Hb_160366_010--Hb_156554_010 Hb_005222_020 Hb_005222_020 Hb_000094_260--Hb_005222_020 Hb_000003_770 Hb_000003_770 Hb_000094_260--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_000094_260--Hb_001379_130 Hb_039305_010 Hb_039305_010 Hb_000094_260--Hb_039305_010 Hb_000275_010 Hb_000275_010 Hb_000094_260--Hb_000275_010 Hb_002272_190--Hb_001865_110 Hb_002272_190--Hb_005222_020 Hb_002272_190--Hb_000094_260 Hb_007761_050 Hb_007761_050 Hb_002272_190--Hb_007761_050 Hb_001136_120 Hb_001136_120 Hb_002272_190--Hb_001136_120 Hb_011349_010--Hb_156554_010 Hb_004324_170 Hb_004324_170 Hb_011349_010--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_011349_010--Hb_007545_040 Hb_001865_110--Hb_005222_020 Hb_106029_010 Hb_106029_010 Hb_001865_110--Hb_106029_010 Hb_000501_020 Hb_000501_020 Hb_001865_110--Hb_000501_020 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_148262_020 Hb_148262_020 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0209975 0 0 0.00797045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0620914 0.0325712 0 0 0

CAGE analysis