Hb_000123_200

Information

Type -
Description -
Location Contig123: 163977-166084
Sequence    

Annotation

kegg
ID rcu:RCOM_0466040
description Auxin-induced protein 5NG4, putative
nr
ID XP_012081572.1
description PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
swissprot
ID O80638
description WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1
trembl
ID B9SR48
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0466040 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at2g39510-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06974: 164099-164333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000123_200 0.0 - - PREDICTED: WAT1-related protein At2g39510 [Jatropha curcas]
2 Hb_160366_010 0.0088472407 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_002099_010 0.1756012119 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
4 Hb_007416_040 0.1977033578 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_011349_010 0.2377789864 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
6 Hb_000175_580 0.242851811 transcription factor, desease resistance TF Family: C3H, Gene Name: zf-CCCH hypothetical protein POPTR_0013s00890g [Populus trichocarpa]
7 Hb_156554_010 0.2470103972 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_141408_010 0.2622128773 - - PREDICTED: uncharacterized protein LOC105631382 [Jatropha curcas]
9 Hb_001348_200 0.2634491833 - - -
10 Hb_021906_010 0.2635298176 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
11 Hb_012163_030 0.2670070862 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
12 Hb_007386_010 0.2754185272 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
13 Hb_018006_020 0.2935321707 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
14 Hb_006053_010 0.2935321717 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
15 Hb_000914_160 0.293532173 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
16 Hb_000111_160 0.2935321746 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
17 Hb_007393_010 0.2935321759 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_004899_270 0.2935321802 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
19 Hb_123098_010 0.2935321859 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_028462_010 0.2935321867 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]

Gene co-expression network

sample Hb_000123_200 Hb_000123_200 Hb_160366_010 Hb_160366_010 Hb_000123_200--Hb_160366_010 Hb_002099_010 Hb_002099_010 Hb_000123_200--Hb_002099_010 Hb_007416_040 Hb_007416_040 Hb_000123_200--Hb_007416_040 Hb_011349_010 Hb_011349_010 Hb_000123_200--Hb_011349_010 Hb_000175_580 Hb_000175_580 Hb_000123_200--Hb_000175_580 Hb_156554_010 Hb_156554_010 Hb_000123_200--Hb_156554_010 Hb_160366_010--Hb_002099_010 Hb_160366_010--Hb_007416_040 Hb_160366_010--Hb_000175_580 Hb_160366_010--Hb_011349_010 Hb_160366_010--Hb_156554_010 Hb_021906_010 Hb_021906_010 Hb_002099_010--Hb_021906_010 Hb_007386_010 Hb_007386_010 Hb_002099_010--Hb_007386_010 Hb_002259_140 Hb_002259_140 Hb_002099_010--Hb_002259_140 Hb_002099_010--Hb_000175_580 Hb_000094_260 Hb_000094_260 Hb_007416_040--Hb_000094_260 Hb_002272_190 Hb_002272_190 Hb_007416_040--Hb_002272_190 Hb_007416_040--Hb_011349_010 Hb_001865_110 Hb_001865_110 Hb_007416_040--Hb_001865_110 Hb_011349_010--Hb_156554_010 Hb_004324_170 Hb_004324_170 Hb_011349_010--Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_011349_010--Hb_007545_040 Hb_001529_070 Hb_001529_070 Hb_000175_580--Hb_001529_070 Hb_000175_580--Hb_021906_010 Hb_141408_010 Hb_141408_010 Hb_000175_580--Hb_141408_010 Hb_156554_010--Hb_002099_010 Hb_156554_010--Hb_007416_040 Hb_000613_150 Hb_000613_150 Hb_156554_010--Hb_000613_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152938 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.044279 0.0348287 0 0 0

CAGE analysis