Hb_002811_160

Information

Type -
Description -
Location Contig2811: 140321-144557
Sequence    

Annotation

kegg
ID vvi:100262295
description pollen-specific protein SF21
nr
ID XP_012089229.1
description PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
swissprot
ID O23969
description Pollen-specific protein SF21 OS=Helianthus annuus GN=SF21 PE=2 SV=1
trembl
ID A0A067JUI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23473 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29412: 140327-144284
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_160 0.0 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
2 Hb_002333_060 0.0940285938 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_107879_010 0.1008040121 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_000061_020 0.1010808647 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
5 Hb_007192_070 0.1019312993 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
6 Hb_022693_140 0.1036884712 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
7 Hb_000212_440 0.1054995299 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001188_070 0.10584634 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
9 Hb_012022_150 0.1067065938 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
10 Hb_005542_130 0.1094072837 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
11 Hb_000245_220 0.1094139372 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
12 Hb_000046_330 0.1100989828 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
13 Hb_011512_110 0.1101010379 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_004330_090 0.1104590253 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_003440_060 0.1105877165 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
16 Hb_003029_070 0.1109325367 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000007_390 0.1113970536 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
18 Hb_000227_170 0.1127843761 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000003_170 0.1128142772 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
20 Hb_001205_300 0.113625743 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]

Gene co-expression network

sample Hb_002811_160 Hb_002811_160 Hb_002333_060 Hb_002333_060 Hb_002811_160--Hb_002333_060 Hb_107879_010 Hb_107879_010 Hb_002811_160--Hb_107879_010 Hb_000061_020 Hb_000061_020 Hb_002811_160--Hb_000061_020 Hb_007192_070 Hb_007192_070 Hb_002811_160--Hb_007192_070 Hb_022693_140 Hb_022693_140 Hb_002811_160--Hb_022693_140 Hb_000212_440 Hb_000212_440 Hb_002811_160--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_002333_060--Hb_011512_110 Hb_002333_060--Hb_022693_140 Hb_012022_150 Hb_012022_150 Hb_002333_060--Hb_012022_150 Hb_071188_010 Hb_071188_010 Hb_002333_060--Hb_071188_010 Hb_003038_200 Hb_003038_200 Hb_002333_060--Hb_003038_200 Hb_000227_170 Hb_000227_170 Hb_107879_010--Hb_000227_170 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_003462_070 Hb_003462_070 Hb_000061_020--Hb_003462_070 Hb_025557_050 Hb_025557_050 Hb_000061_020--Hb_025557_050 Hb_021943_080 Hb_021943_080 Hb_000061_020--Hb_021943_080 Hb_000723_100 Hb_000723_100 Hb_000061_020--Hb_000723_100 Hb_002304_060 Hb_002304_060 Hb_000061_020--Hb_002304_060 Hb_017151_010 Hb_017151_010 Hb_000061_020--Hb_017151_010 Hb_000172_580 Hb_000172_580 Hb_007192_070--Hb_000172_580 Hb_017987_030 Hb_017987_030 Hb_007192_070--Hb_017987_030 Hb_004330_090 Hb_004330_090 Hb_007192_070--Hb_004330_090 Hb_000074_080 Hb_000074_080 Hb_007192_070--Hb_000074_080 Hb_003376_230 Hb_003376_230 Hb_007192_070--Hb_003376_230 Hb_002553_060 Hb_002553_060 Hb_007192_070--Hb_002553_060 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_005405_020 Hb_005405_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_004452_120 Hb_004452_120 Hb_000212_440--Hb_004452_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86644 1.50513 8.56259 3.96734 6.24703 5.0367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6187 5.60622 2.65802 4.55503 7.72726

CAGE analysis