Hb_035273_020

Information

Type -
Description -
Location Contig35273: 8177-12551
Sequence    

Annotation

kegg
ID rcu:RCOM_1431340
description amidase, putative (EC:3.5.1.4)
nr
ID XP_012089083.1
description PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FR37
description Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1
trembl
ID A0A067JU59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23363 PE=4 SV=1
Gene Ontology
ID GO:0005829
description amidase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36619: 8037-12493 , PASA_asmbl_36620: 8037-10504
cDNA
(Sanger)
(ID:Location)		 001_N11.ab1: 8146-10709 , 020_C20.ab1: 8146-10687 , 041_G20.ab1: 8126-10284

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035273_020 0.0 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
2 Hb_000212_440 0.0660885843 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_004452_120 0.0706220839 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_010863_050 0.0707042277 - - OTU domain-containing protein 6B, putative [Ricinus communis]
5 Hb_001195_400 0.0759741976 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
6 Hb_004846_220 0.0791726724 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
7 Hb_041290_020 0.0798758215 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
8 Hb_012733_040 0.080327309 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
9 Hb_000212_230 0.0822256584 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
10 Hb_000364_050 0.0852585553 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
11 Hb_012150_030 0.0857332779 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_002078_340 0.0881418814 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
13 Hb_006059_030 0.0896149703 - - glutamate dehydrogenase, putative [Ricinus communis]
14 Hb_002811_010 0.090049858 - - cysteine synthase, putative [Ricinus communis]
15 Hb_021374_030 0.0910816382 - - hypothetical protein RCOM_0351490 [Ricinus communis]
16 Hb_000078_140 0.0913371454 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
17 Hb_003376_230 0.0915002034 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
18 Hb_000046_540 0.0915926993 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_028960_020 0.0926156459 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
20 Hb_003883_060 0.0937493015 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_035273_020 Hb_035273_020 Hb_000212_440 Hb_000212_440 Hb_035273_020--Hb_000212_440 Hb_004452_120 Hb_004452_120 Hb_035273_020--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_035273_020--Hb_010863_050 Hb_001195_400 Hb_001195_400 Hb_035273_020--Hb_001195_400 Hb_004846_220 Hb_004846_220 Hb_035273_020--Hb_004846_220 Hb_041290_020 Hb_041290_020 Hb_035273_020--Hb_041290_020 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_005405_020 Hb_005405_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_005539_010 Hb_005539_010 Hb_000212_440--Hb_005539_010 Hb_000212_440--Hb_004452_120 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_004452_120--Hb_000061_180 Hb_010863_050--Hb_012150_030 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110 Hb_000138_100 Hb_000138_100 Hb_004846_220--Hb_000138_100 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004254_090 Hb_004254_090 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_041290_020--Hb_006483_110 Hb_004109_080 Hb_004109_080 Hb_041290_020--Hb_004109_080 Hb_028960_020 Hb_028960_020 Hb_041290_020--Hb_028960_020 Hb_041290_020--Hb_000138_100 Hb_000406_200 Hb_000406_200 Hb_041290_020--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3488 16.7755 41.7578 30.9359 22.0764 25.8538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.1167 26.041 22.3168 38.299 52.3342

CAGE analysis