Hb_002333_060

Information

Type -
Description -
Location Contig2333: 97159-100128
Sequence    

Annotation

kegg
ID rcu:RCOM_1078960
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012085734.1
description PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9ASS6
description Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis thaliana GN=PNSL5 PE=1 SV=1
trembl
ID A0A067JSJ0
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_18005 PE=3 SV=1
Gene Ontology
ID GO:0009533
description peptidyl-prolyl cis-trans isomerase cyp20- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24505: 95499-96944 , PASA_asmbl_24506: 97182-97628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002333_060 0.0 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_011512_110 0.0818337794 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002811_160 0.0940285938 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
4 Hb_022693_140 0.0971690335 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
5 Hb_012022_150 0.0979665308 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
6 Hb_071188_010 0.1032424454 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
7 Hb_003038_200 0.1047348847 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
8 Hb_003376_230 0.1085782628 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
9 Hb_003029_070 0.114256956 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000174_170 0.115007614 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
11 Hb_000753_240 0.1152302976 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
12 Hb_001584_200 0.1160910451 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
13 Hb_000190_030 0.1162902923 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
14 Hb_004330_090 0.1164052494 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_000080_120 0.1174964155 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
16 Hb_000676_070 0.1181775442 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
17 Hb_000212_440 0.1187874092 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001489_050 0.1202184486 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
19 Hb_114310_090 0.1202813388 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
20 Hb_000804_040 0.1207288556 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002333_060 Hb_002333_060 Hb_011512_110 Hb_011512_110 Hb_002333_060--Hb_011512_110 Hb_002811_160 Hb_002811_160 Hb_002333_060--Hb_002811_160 Hb_022693_140 Hb_022693_140 Hb_002333_060--Hb_022693_140 Hb_012022_150 Hb_012022_150 Hb_002333_060--Hb_012022_150 Hb_071188_010 Hb_071188_010 Hb_002333_060--Hb_071188_010 Hb_003038_200 Hb_003038_200 Hb_002333_060--Hb_003038_200 Hb_003376_230 Hb_003376_230 Hb_011512_110--Hb_003376_230 Hb_000212_440 Hb_000212_440 Hb_011512_110--Hb_000212_440 Hb_003747_230 Hb_003747_230 Hb_011512_110--Hb_003747_230 Hb_001584_200 Hb_001584_200 Hb_011512_110--Hb_001584_200 Hb_000462_090 Hb_000462_090 Hb_011512_110--Hb_000462_090 Hb_107879_010 Hb_107879_010 Hb_002811_160--Hb_107879_010 Hb_000061_020 Hb_000061_020 Hb_002811_160--Hb_000061_020 Hb_007192_070 Hb_007192_070 Hb_002811_160--Hb_007192_070 Hb_002811_160--Hb_022693_140 Hb_002811_160--Hb_000212_440 Hb_022693_140--Hb_012022_150 Hb_000804_040 Hb_000804_040 Hb_022693_140--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_071188_010--Hb_003038_200 Hb_000174_170 Hb_000174_170 Hb_071188_010--Hb_000174_170 Hb_000864_030 Hb_000864_030 Hb_071188_010--Hb_000864_030 Hb_000190_030 Hb_000190_030 Hb_071188_010--Hb_000190_030 Hb_002311_450 Hb_002311_450 Hb_071188_010--Hb_002311_450 Hb_000025_690 Hb_000025_690 Hb_071188_010--Hb_000025_690 Hb_004310_140 Hb_004310_140 Hb_003038_200--Hb_004310_140 Hb_000679_020 Hb_000679_020 Hb_003038_200--Hb_000679_020 Hb_000221_140 Hb_000221_140 Hb_003038_200--Hb_000221_140 Hb_003038_200--Hb_000174_170 Hb_001662_140 Hb_001662_140 Hb_003038_200--Hb_001662_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0793 8.59047 29.8523 11.2883 28.6808 15.8359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2756 24.857 18.5382 17.931 36.5823

CAGE analysis