Hb_005917_030

Information

Type -
Description -
Location Contig5917: 28143-32092
Sequence    

Annotation

kegg
ID rcu:RCOM_0992710
description hypothetical protein
nr
ID XP_002520998.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4U1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0992710 PE=4 SV=1
Gene Ontology
ID GO:0005634
description p-loop containing nucleoside triphosphate hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50268: 28041-28404 , PASA_asmbl_50269: 29489-30325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005917_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002078_270 0.1524008734 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
3 Hb_000997_140 0.1576692276 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
4 Hb_001832_040 0.1596635317 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018043_020 0.1610227618 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
6 Hb_001890_010 0.1619756759 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_007576_150 0.1632450937 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
8 Hb_159809_090 0.1663949874 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
9 Hb_000406_190 0.1696022494 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_015778_060 0.1703109535 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
11 Hb_003029_020 0.1704522293 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
12 Hb_000548_060 0.1723434756 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
13 Hb_005695_080 0.17460876 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
14 Hb_002799_130 0.1755402431 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
15 Hb_000934_020 0.1760584958 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
16 Hb_001221_360 0.1761838105 - - late embryogenesis abundant, putative [Ricinus communis]
17 Hb_014361_110 0.1766226149 - - RNA binding protein, putative [Ricinus communis]
18 Hb_001080_030 0.1779416504 - - AMP dependent ligase, putative [Ricinus communis]
19 Hb_000254_110 0.1825206731 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
20 Hb_004108_060 0.1827248567 - - hypothetical protein JCGZ_21975 [Jatropha curcas]

Gene co-expression network

sample Hb_005917_030 Hb_005917_030 Hb_002078_270 Hb_002078_270 Hb_005917_030--Hb_002078_270 Hb_000997_140 Hb_000997_140 Hb_005917_030--Hb_000997_140 Hb_001832_040 Hb_001832_040 Hb_005917_030--Hb_001832_040 Hb_018043_020 Hb_018043_020 Hb_005917_030--Hb_018043_020 Hb_001890_010 Hb_001890_010 Hb_005917_030--Hb_001890_010 Hb_007576_150 Hb_007576_150 Hb_005917_030--Hb_007576_150 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_005695_080 Hb_005695_080 Hb_002078_270--Hb_005695_080 Hb_007317_130 Hb_007317_130 Hb_002078_270--Hb_007317_130 Hb_001054_070 Hb_001054_070 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190 Hb_028707_110 Hb_028707_110 Hb_000997_140--Hb_028707_110 Hb_003077_130 Hb_003077_130 Hb_000997_140--Hb_003077_130 Hb_003029_140 Hb_003029_140 Hb_000997_140--Hb_003029_140 Hb_003929_220 Hb_003929_220 Hb_000997_140--Hb_003929_220 Hb_000997_140--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_000997_140--Hb_001250_020 Hb_015026_080 Hb_015026_080 Hb_001832_040--Hb_015026_080 Hb_000069_490 Hb_000069_490 Hb_001832_040--Hb_000069_490 Hb_000349_240 Hb_000349_240 Hb_001832_040--Hb_000349_240 Hb_002973_110 Hb_002973_110 Hb_001832_040--Hb_002973_110 Hb_001790_080 Hb_001790_080 Hb_001832_040--Hb_001790_080 Hb_143629_140 Hb_143629_140 Hb_001832_040--Hb_143629_140 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_008616_040 Hb_008616_040 Hb_018043_020--Hb_008616_040 Hb_001425_010 Hb_001425_010 Hb_018043_020--Hb_001425_010 Hb_004629_030 Hb_004629_030 Hb_018043_020--Hb_004629_030 Hb_000640_260 Hb_000640_260 Hb_001890_010--Hb_000640_260 Hb_004111_030 Hb_004111_030 Hb_001890_010--Hb_004111_030 Hb_003124_120 Hb_003124_120 Hb_001890_010--Hb_003124_120 Hb_001890_010--Hb_018043_020 Hb_000934_020 Hb_000934_020 Hb_001890_010--Hb_000934_020 Hb_001890_010--Hb_159809_090 Hb_007576_150--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_007576_150--Hb_000189_250 Hb_007576_150--Hb_000640_260 Hb_007576_150--Hb_003029_140 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0486275 0.209542 0.237626 0.0285887 0.025282 0.0648676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0594033 0.0934705 0.0439747 0.121186 0.489734

CAGE analysis