Hb_002078_270

Information

Type -
Description -
Location Contig2078: 188964-191231
Sequence    

Annotation

kegg
ID rcu:RCOM_1080380
description hypothetical protein
nr
ID XP_012085679.1
description PREDICTED: F-box protein At1g67340 [Jatropha curcas]
swissprot
ID Q9FYF9
description F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1
trembl
ID A0A067JVI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17961 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at1g67340-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21447: 189240-191052
cDNA
(Sanger)
(ID:Location)		 016_H17.ab1: 189991-191051 , 023_C23.ab1: 190215-191051

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_270 0.0 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
2 Hb_005917_030 0.1524008734 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000920_130 0.1533836914 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005695_080 0.159573064 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
5 Hb_007317_130 0.1615557265 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
6 Hb_001054_070 0.1620298984 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
7 Hb_000406_190 0.1634439972 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_001269_370 0.1670417082 - - PREDICTED: U-box domain-containing protein 43 [Jatropha curcas]
9 Hb_001080_030 0.1770435875 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_007576_150 0.1784938514 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
11 Hb_014006_010 0.1794538316 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
12 Hb_001221_360 0.1801170228 - - late embryogenesis abundant, putative [Ricinus communis]
13 Hb_000619_030 0.1802065729 - - unnamed protein product [Vitis vinifera]
14 Hb_021079_020 0.1817248919 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
15 Hb_005183_140 0.1844521458 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
16 Hb_015778_060 0.1863833667 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
17 Hb_000958_100 0.1907844545 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_012812_010 0.1915715448 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
19 Hb_000154_130 0.1939966157 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
20 Hb_009150_030 0.197066157 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]

Gene co-expression network

sample Hb_002078_270 Hb_002078_270 Hb_005917_030 Hb_005917_030 Hb_002078_270--Hb_005917_030 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_005695_080 Hb_005695_080 Hb_002078_270--Hb_005695_080 Hb_007317_130 Hb_007317_130 Hb_002078_270--Hb_007317_130 Hb_001054_070 Hb_001054_070 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190 Hb_000997_140 Hb_000997_140 Hb_005917_030--Hb_000997_140 Hb_001832_040 Hb_001832_040 Hb_005917_030--Hb_001832_040 Hb_018043_020 Hb_018043_020 Hb_005917_030--Hb_018043_020 Hb_001890_010 Hb_001890_010 Hb_005917_030--Hb_001890_010 Hb_007576_150 Hb_007576_150 Hb_005917_030--Hb_007576_150 Hb_001269_370 Hb_001269_370 Hb_000920_130--Hb_001269_370 Hb_002259_170 Hb_002259_170 Hb_000920_130--Hb_002259_170 Hb_000086_630 Hb_000086_630 Hb_000920_130--Hb_000086_630 Hb_000506_110 Hb_000506_110 Hb_000920_130--Hb_000506_110 Hb_000270_120 Hb_000270_120 Hb_000920_130--Hb_000270_120 Hb_001571_060 Hb_001571_060 Hb_000920_130--Hb_001571_060 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_000958_100 Hb_000958_100 Hb_007317_130--Hb_000958_100 Hb_007317_130--Hb_001080_030 Hb_000212_370 Hb_000212_370 Hb_007317_130--Hb_000212_370 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400 Hb_002343_010 Hb_002343_010 Hb_001054_070--Hb_002343_010 Hb_121089_020 Hb_121089_020 Hb_001054_070--Hb_121089_020 Hb_001054_070--Hb_001269_370 Hb_001054_070--Hb_002259_170 Hb_001054_070--Hb_000506_110 Hb_008120_040 Hb_008120_040 Hb_001054_070--Hb_008120_040 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000032_020 Hb_000032_020 Hb_000406_190--Hb_000032_020 Hb_000406_190--Hb_001865_010 Hb_000731_290 Hb_000731_290 Hb_000406_190--Hb_000731_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01486 51.5624 23.3534 9.69266 2.19303 5.37549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.15823 18.6686 11.5726 18.7364 68.8445

CAGE analysis