Hb_000212_370

Information

Type -
Description -
Location Contig212: 371060-373080
Sequence    

Annotation

kegg
ID rcu:RCOM_1077810
description thioredoxin f-type, putative
nr
ID XP_002514830.1
description thioredoxin f-type, putative [Ricinus communis]
swissprot
ID Q9XFH8
description Thioredoxin F1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2
trembl
ID B9RM61
description Thioredoxin f-type, putative OS=Ricinus communis GN=RCOM_1077810 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin f- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21975: 370984-371248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_370 0.0 - - thioredoxin f-type, putative [Ricinus communis]
2 Hb_021079_020 0.1390958609 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
3 Hb_004162_190 0.1444223849 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
4 Hb_005288_180 0.1506121918 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007576_150 0.1508127886 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
6 Hb_002799_130 0.1516392207 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
7 Hb_003494_130 0.1517988174 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
8 Hb_000997_140 0.1552631651 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_001250_020 0.1553838858 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
10 Hb_003929_220 0.1561512645 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000537_070 0.1563305501 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
12 Hb_003750_130 0.1566989548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000762_110 0.1571956121 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
14 Hb_002016_050 0.1572521549 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_007192_090 0.1586838021 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
16 Hb_001828_120 0.1630962744 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
17 Hb_003029_140 0.1631342408 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
18 Hb_002928_030 0.1690246647 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
19 Hb_018043_020 0.1691273271 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
20 Hb_002249_030 0.1699204393 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000212_370 Hb_000212_370 Hb_021079_020 Hb_021079_020 Hb_000212_370--Hb_021079_020 Hb_004162_190 Hb_004162_190 Hb_000212_370--Hb_004162_190 Hb_005288_180 Hb_005288_180 Hb_000212_370--Hb_005288_180 Hb_007576_150 Hb_007576_150 Hb_000212_370--Hb_007576_150 Hb_002799_130 Hb_002799_130 Hb_000212_370--Hb_002799_130 Hb_003494_130 Hb_003494_130 Hb_000212_370--Hb_003494_130 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_013399_090 Hb_013399_090 Hb_021079_020--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_021079_020--Hb_000340_360 Hb_015778_060 Hb_015778_060 Hb_021079_020--Hb_015778_060 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160 Hb_005701_130 Hb_005701_130 Hb_004162_190--Hb_005701_130 Hb_004162_190--Hb_021079_020 Hb_000186_080 Hb_000186_080 Hb_004162_190--Hb_000186_080 Hb_006816_370 Hb_006816_370 Hb_004162_190--Hb_006816_370 Hb_000170_130 Hb_000170_130 Hb_004162_190--Hb_000170_130 Hb_000538_280 Hb_000538_280 Hb_004162_190--Hb_000538_280 Hb_005015_020 Hb_005015_020 Hb_005288_180--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_005288_180--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_005288_180--Hb_004324_120 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_000934_020 Hb_000934_020 Hb_007576_150--Hb_000934_020 Hb_000189_250 Hb_000189_250 Hb_007576_150--Hb_000189_250 Hb_000640_260 Hb_000640_260 Hb_007576_150--Hb_000640_260 Hb_003029_140 Hb_003029_140 Hb_007576_150--Hb_003029_140 Hb_001890_010 Hb_001890_010 Hb_007576_150--Hb_001890_010 Hb_003878_080 Hb_003878_080 Hb_007576_150--Hb_003878_080 Hb_002799_130--Hb_005015_020 Hb_000933_110 Hb_000933_110 Hb_002799_130--Hb_000933_110 Hb_002799_130--Hb_002928_030 Hb_003376_390 Hb_003376_390 Hb_002799_130--Hb_003376_390 Hb_002799_130--Hb_003929_220 Hb_002799_130--Hb_004324_120 Hb_002010_110 Hb_002010_110 Hb_003494_130--Hb_002010_110 Hb_003941_030 Hb_003941_030 Hb_003494_130--Hb_003941_030 Hb_026314_030 Hb_026314_030 Hb_003494_130--Hb_026314_030 Hb_000684_280 Hb_000684_280 Hb_003494_130--Hb_000684_280 Hb_000032_400 Hb_000032_400 Hb_003494_130--Hb_000032_400 Hb_011053_030 Hb_011053_030 Hb_003494_130--Hb_011053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.85646 5.41133 4.39406 2.06699 1.13382 0.955754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.21002 0.775508 1.82791 0.777915 11.0348

CAGE analysis