Hb_004162_190

Information

Type -
Description -
Location Contig4162: 160236-166463
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22730g
description hypothetical protein
nr
ID XP_012064667.1
description PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
swissprot
ID P29503
description Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
trembl
ID A0A067LI90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05416 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41181: 160409-160524 , PASA_asmbl_41182: 160664-165286 , PASA_asmbl_41183: 161191-161442 , PASA_asmbl_41184: 165296-165550 , PASA_asmbl_41186: 166888-167041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_190 0.0 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
2 Hb_005701_130 0.1142745297 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
3 Hb_021079_020 0.1149045157 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
4 Hb_000186_080 0.1153058737 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
5 Hb_006816_370 0.1216658742 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
6 Hb_000170_130 0.1221370344 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
7 Hb_000538_280 0.1261666312 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
8 Hb_003417_040 0.1296242619 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
9 Hb_012053_090 0.130149268 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
10 Hb_012506_040 0.1310852042 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
11 Hb_007192_090 0.1336883172 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
12 Hb_000367_020 0.1338392291 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
13 Hb_015778_060 0.1345698642 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
14 Hb_002016_050 0.1352821086 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
15 Hb_001279_040 0.1368744247 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
16 Hb_009178_060 0.1372240409 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001393_010 0.1375326195 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
18 Hb_001563_010 0.1377520296 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
19 Hb_001790_080 0.1378334568 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
20 Hb_022378_010 0.1382552014 - - PREDICTED: uncharacterized protein LOC105634715 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_190 Hb_004162_190 Hb_005701_130 Hb_005701_130 Hb_004162_190--Hb_005701_130 Hb_021079_020 Hb_021079_020 Hb_004162_190--Hb_021079_020 Hb_000186_080 Hb_000186_080 Hb_004162_190--Hb_000186_080 Hb_006816_370 Hb_006816_370 Hb_004162_190--Hb_006816_370 Hb_000170_130 Hb_000170_130 Hb_004162_190--Hb_000170_130 Hb_000538_280 Hb_000538_280 Hb_004162_190--Hb_000538_280 Hb_012053_090 Hb_012053_090 Hb_005701_130--Hb_012053_090 Hb_005488_170 Hb_005488_170 Hb_005701_130--Hb_005488_170 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_002600_060 Hb_002600_060 Hb_005701_130--Hb_002600_060 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_013399_090 Hb_013399_090 Hb_021079_020--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_021079_020--Hb_000340_360 Hb_015778_060 Hb_015778_060 Hb_021079_020--Hb_015778_060 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160 Hb_000186_080--Hb_005701_130 Hb_001408_120 Hb_001408_120 Hb_000186_080--Hb_001408_120 Hb_001341_010 Hb_001341_010 Hb_000186_080--Hb_001341_010 Hb_002016_050 Hb_002016_050 Hb_000186_080--Hb_002016_050 Hb_013749_050 Hb_013749_050 Hb_000186_080--Hb_013749_050 Hb_002973_110 Hb_002973_110 Hb_000186_080--Hb_002973_110 Hb_001563_010 Hb_001563_010 Hb_006816_370--Hb_001563_010 Hb_006816_370--Hb_001648_020 Hb_001005_130 Hb_001005_130 Hb_006816_370--Hb_001005_130 Hb_006816_370--Hb_000170_130 Hb_006816_370--Hb_000538_280 Hb_000193_330 Hb_000193_330 Hb_006816_370--Hb_000193_330 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_002686_090 Hb_002686_090 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.57158 21.4114 10.3198 10.189 5.5214 7.63176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.50943 6.59459 8.94904 4.78625 32.288

CAGE analysis