Hb_007044_100

Information

Type -
Description -
Location Contig7044: 78472-81286
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10420g
description POPTRDRAFT_759263; hypothetical protein
nr
ID XP_002305959.2
description hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
swissprot
ID Q9LFS2
description Protein GAMETE EXPRESSED 3 OS=Arabidopsis thaliana GN=GEX3 PE=2 SV=1
trembl
ID B9H3R4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s10420g PE=4 SV=2
Gene Ontology
ID GO:0032501
description protein gamete expressed 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55020: 57488-78284 , PASA_asmbl_55021: 78685-78985 , PASA_asmbl_55022: 79022-79484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_100 0.0 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
2 Hb_002552_020 0.1757941602 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
3 Hb_003910_050 0.1834188732 - - PREDICTED: uncharacterized protein LOC105646926 [Jatropha curcas]
4 Hb_005917_030 0.1964365656 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005695_080 0.2027981805 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
6 Hb_002235_100 0.2072627233 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
7 Hb_004502_010 0.2076904255 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
8 Hb_002783_150 0.217141412 - - cyclophilin [Hevea brasiliensis]
9 Hb_001080_030 0.2208068806 - - AMP dependent ligase, putative [Ricinus communis]
10 Hb_003040_040 0.2232351721 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1-like isoform X2 [Jatropha curcas]
11 Hb_004117_270 0.2253875388 - - -
12 Hb_001925_070 0.2260572081 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
13 Hb_002529_090 0.2270019284 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Hevea brasiliensis]
14 Hb_002078_270 0.2291069423 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
15 Hb_029695_120 0.2304937101 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
16 Hb_000072_170 0.2309186275 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
17 Hb_159809_090 0.2314727057 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
18 Hb_004162_220 0.2319923238 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
19 Hb_004291_040 0.23221181 - - hexokinase [Manihot esculenta]
20 Hb_000260_160 0.2323609184 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007044_100 Hb_007044_100 Hb_002552_020 Hb_002552_020 Hb_007044_100--Hb_002552_020 Hb_003910_050 Hb_003910_050 Hb_007044_100--Hb_003910_050 Hb_005917_030 Hb_005917_030 Hb_007044_100--Hb_005917_030 Hb_005695_080 Hb_005695_080 Hb_007044_100--Hb_005695_080 Hb_002235_100 Hb_002235_100 Hb_007044_100--Hb_002235_100 Hb_004502_010 Hb_004502_010 Hb_007044_100--Hb_004502_010 Hb_001925_070 Hb_001925_070 Hb_002552_020--Hb_001925_070 Hb_002552_020--Hb_005917_030 Hb_000203_210 Hb_000203_210 Hb_002552_020--Hb_000203_210 Hb_002078_270 Hb_002078_270 Hb_002552_020--Hb_002078_270 Hb_000808_260 Hb_000808_260 Hb_002552_020--Hb_000808_260 Hb_001105_100 Hb_001105_100 Hb_003910_050--Hb_001105_100 Hb_029695_120 Hb_029695_120 Hb_003910_050--Hb_029695_120 Hb_004162_220 Hb_004162_220 Hb_003910_050--Hb_004162_220 Hb_001511_090 Hb_001511_090 Hb_003910_050--Hb_001511_090 Hb_000617_250 Hb_000617_250 Hb_003910_050--Hb_000617_250 Hb_003910_050--Hb_005695_080 Hb_005917_030--Hb_002078_270 Hb_000997_140 Hb_000997_140 Hb_005917_030--Hb_000997_140 Hb_001832_040 Hb_001832_040 Hb_005917_030--Hb_001832_040 Hb_018043_020 Hb_018043_020 Hb_005917_030--Hb_018043_020 Hb_001890_010 Hb_001890_010 Hb_005917_030--Hb_001890_010 Hb_007576_150 Hb_007576_150 Hb_005917_030--Hb_007576_150 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_001865_010 Hb_001865_010 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_001969_130 Hb_001969_130 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_020025_010 Hb_020025_010 Hb_002235_100--Hb_020025_010 Hb_000909_080 Hb_000909_080 Hb_002235_100--Hb_000909_080 Hb_000204_070 Hb_000204_070 Hb_002235_100--Hb_000204_070 Hb_001214_050 Hb_001214_050 Hb_002235_100--Hb_001214_050 Hb_034083_020 Hb_034083_020 Hb_002235_100--Hb_034083_020 Hb_000111_110 Hb_000111_110 Hb_002235_100--Hb_000111_110 Hb_025194_090 Hb_025194_090 Hb_004502_010--Hb_025194_090 Hb_005917_020 Hb_005917_020 Hb_004502_010--Hb_005917_020 Hb_003029_020 Hb_003029_020 Hb_004502_010--Hb_003029_020 Hb_005116_100 Hb_005116_100 Hb_004502_010--Hb_005116_100 Hb_005618_080 Hb_005618_080 Hb_004502_010--Hb_005618_080 Hb_000402_020 Hb_000402_020 Hb_004502_010--Hb_000402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00992479 0.975325 0.938258 0.227569 0.17825 0.191082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.451117 0.674409 0.0336555 0.9532 1.83788

CAGE analysis