Hb_001925_070

Information

Type -
Description -
Location Contig1925: 99606-101053
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23870g
description POPTRDRAFT_832072; 40S ribosomal protein S3
nr
ID XP_011010381.1
description PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID A9PBQ6
description 40S ribosomal protein S3 OS=Populus trichocarpa GN=POPTR_0006s23870g PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s3-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001925_070 0.0 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
2 Hb_002552_020 0.1423958433 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
3 Hb_000254_110 0.1864215531 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
4 Hb_000808_260 0.1981337868 - - hypothetical protein RCOM_1434920 [Ricinus communis]
5 Hb_012539_040 0.2029873871 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
6 Hb_004648_030 0.2067887851 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
7 Hb_005917_030 0.2090487122 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000527_120 0.2127094383 - - hypothetical protein VITISV_027174 [Vitis vinifera]
9 Hb_000453_280 0.2138729446 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
10 Hb_001865_010 0.2178311357 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
11 Hb_007317_130 0.2217541563 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
12 Hb_000203_210 0.2239728477 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
13 Hb_003786_010 0.2241045645 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
14 Hb_140389_010 0.2247607056 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_003020_300 0.2255859313 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007044_100 0.2260572081 - - hypothetical protein POPTR_0004s10420g [Populus trichocarpa]
17 Hb_007534_030 0.2269282718 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
18 Hb_000933_110 0.2358680929 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
19 Hb_004976_080 0.2370137464 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_011218_030 0.2372159122 - - hypothetical protein VITISV_002891 [Vitis vinifera]

Gene co-expression network

sample Hb_001925_070 Hb_001925_070 Hb_002552_020 Hb_002552_020 Hb_001925_070--Hb_002552_020 Hb_000254_110 Hb_000254_110 Hb_001925_070--Hb_000254_110 Hb_000808_260 Hb_000808_260 Hb_001925_070--Hb_000808_260 Hb_012539_040 Hb_012539_040 Hb_001925_070--Hb_012539_040 Hb_004648_030 Hb_004648_030 Hb_001925_070--Hb_004648_030 Hb_005917_030 Hb_005917_030 Hb_001925_070--Hb_005917_030 Hb_007044_100 Hb_007044_100 Hb_002552_020--Hb_007044_100 Hb_002552_020--Hb_005917_030 Hb_000203_210 Hb_000203_210 Hb_002552_020--Hb_000203_210 Hb_002078_270 Hb_002078_270 Hb_002552_020--Hb_002078_270 Hb_002552_020--Hb_000808_260 Hb_000254_110--Hb_004648_030 Hb_001865_010 Hb_001865_010 Hb_000254_110--Hb_001865_010 Hb_000254_110--Hb_012539_040 Hb_022425_050 Hb_022425_050 Hb_000254_110--Hb_022425_050 Hb_001863_180 Hb_001863_180 Hb_000254_110--Hb_001863_180 Hb_000334_050 Hb_000334_050 Hb_000254_110--Hb_000334_050 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010 Hb_004324_120 Hb_004324_120 Hb_012539_040--Hb_004324_120 Hb_005015_020 Hb_005015_020 Hb_012539_040--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_012539_040--Hb_004346_040 Hb_140389_010 Hb_140389_010 Hb_012539_040--Hb_140389_010 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_000270_280 Hb_000270_280 Hb_004648_030--Hb_000270_280 Hb_004223_270 Hb_004223_270 Hb_004648_030--Hb_004223_270 Hb_004648_030--Hb_000334_050 Hb_003680_090 Hb_003680_090 Hb_004648_030--Hb_003680_090 Hb_004162_270 Hb_004162_270 Hb_004648_030--Hb_004162_270 Hb_000940_030 Hb_000940_030 Hb_004648_030--Hb_000940_030 Hb_005917_030--Hb_002078_270 Hb_000997_140 Hb_000997_140 Hb_005917_030--Hb_000997_140 Hb_001832_040 Hb_001832_040 Hb_005917_030--Hb_001832_040 Hb_018043_020 Hb_018043_020 Hb_005917_030--Hb_018043_020 Hb_001890_010 Hb_001890_010 Hb_005917_030--Hb_001890_010 Hb_007576_150 Hb_007576_150 Hb_005917_030--Hb_007576_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177201 1.26984 1.1952 0.202147 0.0508356 0.0484479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.631624 0.1985 0 0.575724 2.43153

CAGE analysis