Hb_000254_110

Information

Type -
Description -
Location Contig254: 148433-149597
Sequence    

Annotation

kegg
ID rcu:RCOM_1493950
description cytoplasmic dynein light chain, putative
nr
ID XP_012073370.1
description PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
swissprot
ID Q94748
description Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1
trembl
ID A0A067KQK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06299 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26537: 148776-149249 , PASA_asmbl_26538: 149373-149539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000254_110 0.0 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
2 Hb_004648_030 0.1395806867 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
3 Hb_001865_010 0.150550173 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
4 Hb_012539_040 0.1538297682 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
5 Hb_022425_050 0.1622769974 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
6 Hb_001863_180 0.1714671594 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
7 Hb_000334_050 0.1735136731 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_004324_120 0.1789158976 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
9 Hb_004346_040 0.1792043411 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
10 Hb_000933_110 0.1807857122 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
11 Hb_000446_040 0.1813965149 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
12 Hb_005917_030 0.1825206731 - - conserved hypothetical protein [Ricinus communis]
13 Hb_013968_010 0.182543222 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_004117_270 0.182947603 - - -
15 Hb_000406_190 0.1841487706 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_003680_090 0.1844620775 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
17 Hb_004223_270 0.1848226655 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
18 Hb_001925_070 0.1864215531 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_005731_100 0.1875372777 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_001227_140 0.1889618202 - - PREDICTED: protein ROS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000254_110 Hb_000254_110 Hb_004648_030 Hb_004648_030 Hb_000254_110--Hb_004648_030 Hb_001865_010 Hb_001865_010 Hb_000254_110--Hb_001865_010 Hb_012539_040 Hb_012539_040 Hb_000254_110--Hb_012539_040 Hb_022425_050 Hb_022425_050 Hb_000254_110--Hb_022425_050 Hb_001863_180 Hb_001863_180 Hb_000254_110--Hb_001863_180 Hb_000334_050 Hb_000334_050 Hb_000254_110--Hb_000334_050 Hb_000270_280 Hb_000270_280 Hb_004648_030--Hb_000270_280 Hb_004223_270 Hb_004223_270 Hb_004648_030--Hb_004223_270 Hb_004648_030--Hb_000334_050 Hb_003680_090 Hb_003680_090 Hb_004648_030--Hb_003680_090 Hb_004162_270 Hb_004162_270 Hb_004648_030--Hb_004162_270 Hb_000940_030 Hb_000940_030 Hb_004648_030--Hb_000940_030 Hb_001865_010--Hb_022425_050 Hb_001124_140 Hb_001124_140 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_005695_080 Hb_005695_080 Hb_001865_010--Hb_005695_080 Hb_001969_130 Hb_001969_130 Hb_001865_010--Hb_001969_130 Hb_001425_010 Hb_001425_010 Hb_001865_010--Hb_001425_010 Hb_004324_120 Hb_004324_120 Hb_012539_040--Hb_004324_120 Hb_005015_020 Hb_005015_020 Hb_012539_040--Hb_005015_020 Hb_004346_040 Hb_004346_040 Hb_012539_040--Hb_004346_040 Hb_140389_010 Hb_140389_010 Hb_012539_040--Hb_140389_010 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_005731_100 Hb_005731_100 Hb_022425_050--Hb_005731_100 Hb_022425_050--Hb_004223_270 Hb_022425_050--Hb_000334_050 Hb_022425_050--Hb_001124_140 Hb_022425_050--Hb_001969_130 Hb_003053_070 Hb_003053_070 Hb_001863_180--Hb_003053_070 Hb_001863_180--Hb_003680_090 Hb_000310_060 Hb_000310_060 Hb_001863_180--Hb_000310_060 Hb_001863_180--Hb_000270_280 Hb_005527_060 Hb_005527_060 Hb_001863_180--Hb_005527_060 Hb_001360_030 Hb_001360_030 Hb_001863_180--Hb_001360_030 Hb_000334_050--Hb_004223_270 Hb_000334_050--Hb_000933_110 Hb_027445_100 Hb_027445_100 Hb_000334_050--Hb_027445_100 Hb_000334_050--Hb_005731_100 Hb_000327_200 Hb_000327_200 Hb_000334_050--Hb_000327_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22798 15.8183 32.7817 4.64502 0.340586 2.72262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15752 2.36229 1.9567 13.9234 36.0446

CAGE analysis