Hb_001360_030

Information

Type -
Description -
Location Contig1360: 56295-60119
Sequence    

Annotation

kegg
ID rcu:RCOM_1354300
description amino acid binding protein, putative
nr
ID XP_012082440.1
description PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
swissprot
ID Q9SJM1
description ACT domain-containing protein ACR10 OS=Arabidopsis thaliana GN=ACR10 PE=2 SV=1
trembl
ID A0A067JYX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16560 PE=4 SV=1
Gene Ontology
ID GO:0016597
description act domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10019: 56363-59967
cDNA
(Sanger)
(ID:Location)		 021_O20.ab1: 57892-59965 , 044_B22.ab1: 57830-59965 , 044_F18.ab1: 57864-59965

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_030 0.0 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
2 Hb_010632_020 0.0923295264 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
3 Hb_001365_020 0.1108914036 - - hypothetical protein PRUPE_ppa000927mg [Prunus persica]
4 Hb_002636_060 0.111810979 - - conserved hypothetical protein [Ricinus communis]
5 Hb_112064_010 0.1119201423 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
6 Hb_005276_070 0.1141747089 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
7 Hb_001365_030 0.1147752441 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
8 Hb_002942_140 0.1248395897 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
9 Hb_003053_070 0.1288678463 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
10 Hb_000230_530 0.129095681 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001863_180 0.1342476424 - - PREDICTED: serine/threonine-protein kinase SAPK2 isoform X1 [Jatropha curcas]
12 Hb_000120_740 0.137478201 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
13 Hb_007765_130 0.1382099319 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
14 Hb_000012_320 0.1390460174 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
15 Hb_001001_120 0.1397937523 - - protein phosphatase, putative [Ricinus communis]
16 Hb_005568_050 0.140338474 - - ascorbate peroxidase [Hevea brasiliensis]
17 Hb_002432_050 0.1428716031 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
18 Hb_010632_010 0.1436436416 - - PREDICTED: bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial [Jatropha curcas]
19 Hb_003050_360 0.1443325683 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
20 Hb_001821_060 0.1444502242 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]

Gene co-expression network

sample Hb_001360_030 Hb_001360_030 Hb_010632_020 Hb_010632_020 Hb_001360_030--Hb_010632_020 Hb_001365_020 Hb_001365_020 Hb_001360_030--Hb_001365_020 Hb_002636_060 Hb_002636_060 Hb_001360_030--Hb_002636_060 Hb_112064_010 Hb_112064_010 Hb_001360_030--Hb_112064_010 Hb_005276_070 Hb_005276_070 Hb_001360_030--Hb_005276_070 Hb_001365_030 Hb_001365_030 Hb_001360_030--Hb_001365_030 Hb_010632_020--Hb_001365_030 Hb_000940_030 Hb_000940_030 Hb_010632_020--Hb_000940_030 Hb_002374_450 Hb_002374_450 Hb_010632_020--Hb_002374_450 Hb_003053_070 Hb_003053_070 Hb_010632_020--Hb_003053_070 Hb_010632_020--Hb_005276_070 Hb_001365_010 Hb_001365_010 Hb_001365_020--Hb_001365_010 Hb_000441_050 Hb_000441_050 Hb_001365_020--Hb_000441_050 Hb_001365_020--Hb_003053_070 Hb_005977_060 Hb_005977_060 Hb_001365_020--Hb_005977_060 Hb_000163_110 Hb_000163_110 Hb_001365_020--Hb_000163_110 Hb_001365_020--Hb_005276_070 Hb_021346_050 Hb_021346_050 Hb_002636_060--Hb_021346_050 Hb_000032_610 Hb_000032_610 Hb_002636_060--Hb_000032_610 Hb_005839_090 Hb_005839_090 Hb_002636_060--Hb_005839_090 Hb_000416_090 Hb_000416_090 Hb_002636_060--Hb_000416_090 Hb_022693_110 Hb_022693_110 Hb_002636_060--Hb_022693_110 Hb_003050_360 Hb_003050_360 Hb_112064_010--Hb_003050_360 Hb_000635_050 Hb_000635_050 Hb_112064_010--Hb_000635_050 Hb_002942_140 Hb_002942_140 Hb_112064_010--Hb_002942_140 Hb_034579_020 Hb_034579_020 Hb_112064_010--Hb_034579_020 Hb_000115_360 Hb_000115_360 Hb_112064_010--Hb_000115_360 Hb_005276_070--Hb_005977_060 Hb_002662_110 Hb_002662_110 Hb_005276_070--Hb_002662_110 Hb_005276_070--Hb_000441_050 Hb_005276_070--Hb_003053_070 Hb_007765_130 Hb_007765_130 Hb_001365_030--Hb_007765_130 Hb_001365_030--Hb_000940_030 Hb_000679_080 Hb_000679_080 Hb_001365_030--Hb_000679_080 Hb_002044_160 Hb_002044_160 Hb_001365_030--Hb_002044_160 Hb_001365_030--Hb_003053_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.744564 2.30308 10.4168 6.13049 0.369246 1.22862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.782105 0.432441 0.852898 6.19683 10.0347

CAGE analysis