Hb_022693_110

Information

Type -
Description -
Location Contig22693: 240231-241559
Sequence    

Annotation

kegg
ID tcc:TCM_007572
description Phosphate transporter 4,6
nr
ID AIY53220.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q9FKV1
description Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1
trembl
ID A0A0A1G5X8
description Phosphate transporter OS=Manihot esculenta GN=PT4;6 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable anion transporter 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23568: 238960-241641
cDNA
(Sanger)
(ID:Location)		 044_G23.ab1: 238960-240528

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022693_110 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_000200_330 0.0801711313 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
3 Hb_048476_140 0.1015282643 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
4 Hb_000076_030 0.1033099614 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
5 Hb_011174_040 0.1218305627 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000689_050 0.1224084958 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004994_330 0.1224461902 - - DNA binding protein, putative [Ricinus communis]
8 Hb_000327_360 0.1242586282 - - unnamed protein product [Coffea canephora]
9 Hb_001180_010 0.126641546 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
10 Hb_000207_350 0.1286208986 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
11 Hb_005144_060 0.1297969165 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
12 Hb_003050_360 0.1314234318 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
13 Hb_001104_150 0.1319754487 - - PREDICTED: protein ROS1 [Jatropha curcas]
14 Hb_189003_070 0.135985775 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
15 Hb_001123_310 0.138140246 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
16 Hb_002662_110 0.141043766 - - Kinesin heavy chain, putative [Ricinus communis]
17 Hb_004855_020 0.1426671961 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
18 Hb_000834_180 0.142790348 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
19 Hb_010672_050 0.1431472576 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
20 Hb_000023_110 0.1440286621 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]

Gene co-expression network

sample Hb_022693_110 Hb_022693_110 Hb_000200_330 Hb_000200_330 Hb_022693_110--Hb_000200_330 Hb_048476_140 Hb_048476_140 Hb_022693_110--Hb_048476_140 Hb_000076_030 Hb_000076_030 Hb_022693_110--Hb_000076_030 Hb_011174_040 Hb_011174_040 Hb_022693_110--Hb_011174_040 Hb_000689_050 Hb_000689_050 Hb_022693_110--Hb_000689_050 Hb_004994_330 Hb_004994_330 Hb_022693_110--Hb_004994_330 Hb_050847_040 Hb_050847_040 Hb_000200_330--Hb_050847_040 Hb_004545_080 Hb_004545_080 Hb_000200_330--Hb_004545_080 Hb_001104_150 Hb_001104_150 Hb_000200_330--Hb_001104_150 Hb_000200_330--Hb_000689_050 Hb_002942_140 Hb_002942_140 Hb_000200_330--Hb_002942_140 Hb_048476_140--Hb_000076_030 Hb_001180_010 Hb_001180_010 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_042083_030 Hb_042083_030 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_000076_030--Hb_001180_010 Hb_000076_030--Hb_161396_010 Hb_000076_030--Hb_011174_040 Hb_000076_030--Hb_042083_030 Hb_003050_360 Hb_003050_360 Hb_011174_040--Hb_003050_360 Hb_007101_260 Hb_007101_260 Hb_011174_040--Hb_007101_260 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_010381_040 Hb_010381_040 Hb_011174_040--Hb_010381_040 Hb_000689_050--Hb_003050_360 Hb_005074_040 Hb_005074_040 Hb_000689_050--Hb_005074_040 Hb_014497_010 Hb_014497_010 Hb_000689_050--Hb_014497_010 Hb_000996_080 Hb_000996_080 Hb_000689_050--Hb_000996_080 Hb_006120_060 Hb_006120_060 Hb_000689_050--Hb_006120_060 Hb_000689_050--Hb_004545_080 Hb_004994_330--Hb_001180_010 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_000465_410 Hb_000465_410 Hb_004994_330--Hb_000465_410 Hb_001544_050 Hb_001544_050 Hb_004994_330--Hb_001544_050 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.341885 0.641164 5.34031 5.9662 0.244445 0.392191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215681 0.226226 0.47577 2.48775 4.1774

CAGE analysis