Hb_000208_030

Information

Type -
Description -
Location Contig208: 35540-36868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000208_030 0.0 - - -
2 Hb_089437_010 0.2237155905 - - PREDICTED: polyadenylate-binding protein-interacting protein 10-like isoform X3 [Jatropha curcas]
3 Hb_011030_030 0.2527424014 - - PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
4 Hb_001277_210 0.2582583083 - - -
5 Hb_012033_020 0.2788885556 - - -
6 Hb_000803_040 0.2870301846 - - -
7 Hb_004525_060 0.2993455543 - - -
8 Hb_003416_050 0.3059817413 - - -
9 Hb_000693_020 0.308875565 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
10 Hb_013399_010 0.3138017562 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
11 Hb_092449_010 0.3139454106 - - -
12 Hb_000454_060 0.3175500099 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
13 Hb_003446_050 0.3201895039 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
14 Hb_001065_070 0.3212104329 - - -
15 Hb_132998_020 0.3232363388 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
16 Hb_000749_080 0.3236209471 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
17 Hb_003209_050 0.3268608227 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
18 Hb_000482_060 0.3303354412 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
19 Hb_001377_400 0.3332661899 - - neutral/alkaline invertase [Manihot esculenta]
20 Hb_078604_010 0.3361351172 - - -

Gene co-expression network

sample Hb_000208_030 Hb_000208_030 Hb_089437_010 Hb_089437_010 Hb_000208_030--Hb_089437_010 Hb_011030_030 Hb_011030_030 Hb_000208_030--Hb_011030_030 Hb_001277_210 Hb_001277_210 Hb_000208_030--Hb_001277_210 Hb_012033_020 Hb_012033_020 Hb_000208_030--Hb_012033_020 Hb_000803_040 Hb_000803_040 Hb_000208_030--Hb_000803_040 Hb_004525_060 Hb_004525_060 Hb_000208_030--Hb_004525_060 Hb_089437_010--Hb_001277_210 Hb_089437_010--Hb_011030_030 Hb_003416_050 Hb_003416_050 Hb_089437_010--Hb_003416_050 Hb_036790_090 Hb_036790_090 Hb_089437_010--Hb_036790_090 Hb_000275_180 Hb_000275_180 Hb_089437_010--Hb_000275_180 Hb_011030_030--Hb_003416_050 Hb_005269_030 Hb_005269_030 Hb_011030_030--Hb_005269_030 Hb_027428_030 Hb_027428_030 Hb_011030_030--Hb_027428_030 Hb_000482_060 Hb_000482_060 Hb_011030_030--Hb_000482_060 Hb_092449_010 Hb_092449_010 Hb_001277_210--Hb_092449_010 Hb_012135_010 Hb_012135_010 Hb_001277_210--Hb_012135_010 Hb_001369_260 Hb_001369_260 Hb_001277_210--Hb_001369_260 Hb_000260_150 Hb_000260_150 Hb_001277_210--Hb_000260_150 Hb_188209_010 Hb_188209_010 Hb_012033_020--Hb_188209_010 Hb_005511_100 Hb_005511_100 Hb_012033_020--Hb_005511_100 Hb_000710_010 Hb_000710_010 Hb_012033_020--Hb_000710_010 Hb_021576_040 Hb_021576_040 Hb_012033_020--Hb_021576_040 Hb_003446_050 Hb_003446_050 Hb_012033_020--Hb_003446_050 Hb_000510_330 Hb_000510_330 Hb_012033_020--Hb_000510_330 Hb_032202_030 Hb_032202_030 Hb_000803_040--Hb_032202_030 Hb_000749_080 Hb_000749_080 Hb_000803_040--Hb_000749_080 Hb_148891_010 Hb_148891_010 Hb_000803_040--Hb_148891_010 Hb_000529_240 Hb_000529_240 Hb_000803_040--Hb_000529_240 Hb_003322_010 Hb_003322_010 Hb_000803_040--Hb_003322_010 Hb_000445_190 Hb_000445_190 Hb_000803_040--Hb_000445_190 Hb_000454_060 Hb_000454_060 Hb_004525_060--Hb_000454_060 Hb_009780_080 Hb_009780_080 Hb_004525_060--Hb_009780_080 Hb_000048_020 Hb_000048_020 Hb_004525_060--Hb_000048_020 Hb_010288_040 Hb_010288_040 Hb_004525_060--Hb_010288_040 Hb_096224_020 Hb_096224_020 Hb_004525_060--Hb_096224_020 Hb_132998_020 Hb_132998_020 Hb_004525_060--Hb_132998_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0943735 0.086486 0 0.0349981 0.0662179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0862187 0.135549 0 0.027633 0

CAGE analysis