Hb_000275_180

Information

Type -
Description -
Location Contig275: 258422-260169
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000275_180 0.0 - - -
2 Hb_005565_050 0.2271447682 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
3 Hb_000789_070 0.2318222025 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001541_270 0.241651796 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
5 Hb_022092_120 0.2526626328 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
6 Hb_000264_290 0.2557154686 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
7 Hb_188209_010 0.2592380678 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
8 Hb_001047_150 0.2600056251 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
9 Hb_001865_080 0.2610569457 - - enoyl-CoA hydratase/isomerase family protein [Populus trichocarpa]
10 Hb_000086_060 0.2634611153 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
11 Hb_005653_060 0.2639341537 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
12 Hb_000252_150 0.2704870601 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007632_190 0.2706451361 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
14 Hb_003747_220 0.2715692679 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
15 Hb_001894_050 0.2718512161 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
16 Hb_000003_220 0.272386989 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
17 Hb_000046_490 0.2727518353 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
18 Hb_005375_040 0.2735807963 - - dicer-1, putative [Ricinus communis]
19 Hb_000275_020 0.2736329583 - - PREDICTED: uncharacterized protein LOC105632656 [Jatropha curcas]
20 Hb_112356_040 0.2750145197 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000275_180 Hb_000275_180 Hb_005565_050 Hb_005565_050 Hb_000275_180--Hb_005565_050 Hb_000789_070 Hb_000789_070 Hb_000275_180--Hb_000789_070 Hb_001541_270 Hb_001541_270 Hb_000275_180--Hb_001541_270 Hb_022092_120 Hb_022092_120 Hb_000275_180--Hb_022092_120 Hb_000264_290 Hb_000264_290 Hb_000275_180--Hb_000264_290 Hb_188209_010 Hb_188209_010 Hb_000275_180--Hb_188209_010 Hb_007632_190 Hb_007632_190 Hb_005565_050--Hb_007632_190 Hb_000548_050 Hb_000548_050 Hb_005565_050--Hb_000548_050 Hb_000308_030 Hb_000308_030 Hb_005565_050--Hb_000308_030 Hb_031527_090 Hb_031527_090 Hb_005565_050--Hb_031527_090 Hb_001638_160 Hb_001638_160 Hb_005565_050--Hb_001638_160 Hb_000111_210 Hb_000111_210 Hb_005565_050--Hb_000111_210 Hb_003001_110 Hb_003001_110 Hb_000789_070--Hb_003001_110 Hb_004785_190 Hb_004785_190 Hb_000789_070--Hb_004785_190 Hb_003747_220 Hb_003747_220 Hb_000789_070--Hb_003747_220 Hb_002296_050 Hb_002296_050 Hb_000789_070--Hb_002296_050 Hb_000422_030 Hb_000422_030 Hb_000789_070--Hb_000422_030 Hb_001534_050 Hb_001534_050 Hb_000789_070--Hb_001534_050 Hb_009615_150 Hb_009615_150 Hb_001541_270--Hb_009615_150 Hb_001541_270--Hb_022092_120 Hb_005396_050 Hb_005396_050 Hb_001541_270--Hb_005396_050 Hb_000798_060 Hb_000798_060 Hb_001541_270--Hb_000798_060 Hb_173953_010 Hb_173953_010 Hb_001541_270--Hb_173953_010 Hb_002745_010 Hb_002745_010 Hb_001541_270--Hb_002745_010 Hb_000221_210 Hb_000221_210 Hb_022092_120--Hb_000221_210 Hb_000395_080 Hb_000395_080 Hb_022092_120--Hb_000395_080 Hb_022092_120--Hb_005396_050 Hb_000005_330 Hb_000005_330 Hb_022092_120--Hb_000005_330 Hb_000237_080 Hb_000237_080 Hb_022092_120--Hb_000237_080 Hb_002137_020 Hb_002137_020 Hb_022092_120--Hb_002137_020 Hb_000302_130 Hb_000302_130 Hb_000264_290--Hb_000302_130 Hb_007123_060 Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_012120_030 Hb_012120_030 Hb_000264_290--Hb_012120_030 Hb_008667_040 Hb_008667_040 Hb_000264_290--Hb_008667_040 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_000788_130 Hb_000788_130 Hb_188209_010--Hb_000788_130 Hb_188209_010--Hb_000789_070 Hb_000326_070 Hb_000326_070 Hb_188209_010--Hb_000326_070 Hb_003371_180 Hb_003371_180 Hb_188209_010--Hb_003371_180 Hb_000175_090 Hb_000175_090 Hb_188209_010--Hb_000175_090 Hb_013405_060 Hb_013405_060 Hb_188209_010--Hb_013405_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95984 6.90396 3.74788 1.26267 2.13801 6.36419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8952 2.64452 1.66018 1.68038 0

CAGE analysis