Hb_005565_050

Information

Type -
Description -
Location Contig5565: 30461-32413
Sequence    

Annotation

kegg
ID cic:CICLE_v10010292mg
description hypothetical protein
nr
ID XP_006452568.1
description hypothetical protein CICLE_v10010292mg [Citrus clementina]
swissprot
ID Q94EG9
description Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1
trembl
ID V4TYZ6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010292mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description zinc transporter 11 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48549: 31809-31945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_050 0.0 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
2 Hb_007632_190 0.1159293508 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
3 Hb_000548_050 0.1216688409 - - hypothetical protein POPTR_0008s12570g [Populus trichocarpa]
4 Hb_000308_030 0.1234386239 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
5 Hb_031527_090 0.1244760765 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
6 Hb_001638_160 0.1249667861 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
7 Hb_000111_210 0.1258400712 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
8 Hb_005355_030 0.1276857434 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
9 Hb_003097_170 0.127699628 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
10 Hb_001486_340 0.1283691182 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
11 Hb_003299_030 0.1284653672 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
12 Hb_002078_220 0.1295141959 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_118026_010 0.1295733764 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
14 Hb_000218_010 0.1300939117 - - -
15 Hb_000256_190 0.1326298982 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
16 Hb_000291_060 0.1342444746 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
17 Hb_000258_120 0.1350887706 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
18 Hb_002296_050 0.1372031072 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
19 Hb_001430_120 0.138020081 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
20 Hb_011386_040 0.1391341552 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005565_050 Hb_005565_050 Hb_007632_190 Hb_007632_190 Hb_005565_050--Hb_007632_190 Hb_000548_050 Hb_000548_050 Hb_005565_050--Hb_000548_050 Hb_000308_030 Hb_000308_030 Hb_005565_050--Hb_000308_030 Hb_031527_090 Hb_031527_090 Hb_005565_050--Hb_031527_090 Hb_001638_160 Hb_001638_160 Hb_005565_050--Hb_001638_160 Hb_000111_210 Hb_000111_210 Hb_005565_050--Hb_000111_210 Hb_003097_170 Hb_003097_170 Hb_007632_190--Hb_003097_170 Hb_000221_250 Hb_000221_250 Hb_007632_190--Hb_000221_250 Hb_001722_120 Hb_001722_120 Hb_007632_190--Hb_001722_120 Hb_001030_110 Hb_001030_110 Hb_007632_190--Hb_001030_110 Hb_011249_010 Hb_011249_010 Hb_007632_190--Hb_011249_010 Hb_012114_060 Hb_012114_060 Hb_000548_050--Hb_012114_060 Hb_005565_040 Hb_005565_040 Hb_000548_050--Hb_005565_040 Hb_052764_050 Hb_052764_050 Hb_000548_050--Hb_052764_050 Hb_012799_110 Hb_012799_110 Hb_000548_050--Hb_012799_110 Hb_011942_080 Hb_011942_080 Hb_000548_050--Hb_011942_080 Hb_000394_190 Hb_000394_190 Hb_000548_050--Hb_000394_190 Hb_005337_090 Hb_005337_090 Hb_000308_030--Hb_005337_090 Hb_000179_030 Hb_000179_030 Hb_000308_030--Hb_000179_030 Hb_000915_020 Hb_000915_020 Hb_000308_030--Hb_000915_020 Hb_008453_140 Hb_008453_140 Hb_000308_030--Hb_008453_140 Hb_021576_100 Hb_021576_100 Hb_000308_030--Hb_021576_100 Hb_001926_030 Hb_001926_030 Hb_000308_030--Hb_001926_030 Hb_000336_110 Hb_000336_110 Hb_031527_090--Hb_000336_110 Hb_000258_120 Hb_000258_120 Hb_031527_090--Hb_000258_120 Hb_011909_060 Hb_011909_060 Hb_031527_090--Hb_011909_060 Hb_031711_010 Hb_031711_010 Hb_031527_090--Hb_031711_010 Hb_000264_080 Hb_000264_080 Hb_031527_090--Hb_000264_080 Hb_000034_160 Hb_000034_160 Hb_031527_090--Hb_000034_160 Hb_004970_090 Hb_004970_090 Hb_001638_160--Hb_004970_090 Hb_004916_020 Hb_004916_020 Hb_001638_160--Hb_004916_020 Hb_017491_030 Hb_017491_030 Hb_001638_160--Hb_017491_030 Hb_000218_010 Hb_000218_010 Hb_001638_160--Hb_000218_010 Hb_005355_030 Hb_005355_030 Hb_001638_160--Hb_005355_030 Hb_112798_020 Hb_112798_020 Hb_001638_160--Hb_112798_020 Hb_002374_010 Hb_002374_010 Hb_000111_210--Hb_002374_010 Hb_002217_510 Hb_002217_510 Hb_000111_210--Hb_002217_510 Hb_000111_210--Hb_021576_100 Hb_000111_210--Hb_000308_030 Hb_000340_400 Hb_000340_400 Hb_000111_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_000111_210--Hb_142368_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82733 5.29816 3.74261 1.58309 3.33302 4.94751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54566 2.81916 1.52988 2.73019 0.567161

CAGE analysis