Hb_007632_190

Information

Type -
Description -
Location Contig7632: 165999-172865
Sequence    

Annotation

kegg
ID ath:AT5G55700
description BAM4; inactive beta-amylase 4
nr
ID XP_010483036.1
description PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
swissprot
ID Q9FM68
description Inactive beta-amylase 4, chloroplastic OS=Arabidopsis thaliana GN=BAM4 PE=2 SV=1
trembl
ID F4K4Z1
description Inactive beta-amylase 4 OS=Arabidopsis thaliana GN=BAM4 PE=3 SV=1
Gene Ontology
ID GO:0009507
description inactive beta-amylase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57365: 165942-172790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_190 0.0 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
2 Hb_003097_170 0.094041711 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
3 Hb_000221_250 0.104797311 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
4 Hb_001722_120 0.1073482253 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
5 Hb_001030_110 0.1124742198 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 isoform X1 [Jatropha curcas]
6 Hb_011249_010 0.1126009127 - - PREDICTED: N-alpha-acetyltransferase 35, NatC auxiliary subunit isoform X1 [Jatropha curcas]
7 Hb_005565_050 0.1159293508 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
8 Hb_000111_210 0.12457339 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
9 Hb_021576_100 0.1257539542 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
10 Hb_000227_090 0.126761676 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
11 Hb_000020_150 0.1273465555 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
12 Hb_004046_050 0.1298203276 - - PREDICTED: origin of replication complex subunit 3 [Jatropha curcas]
13 Hb_000308_030 0.1315159012 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
14 Hb_001408_100 0.1320911997 - - pseudouridylate synthase, putative [Ricinus communis]
15 Hb_144166_010 0.1342883584 - - PREDICTED: importin-13 [Jatropha curcas]
16 Hb_002805_190 0.135370595 - - spliceosome associated protein, putative [Ricinus communis]
17 Hb_004235_080 0.1354958567 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_000291_060 0.1361158092 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
19 Hb_131646_010 0.1369703882 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_001486_340 0.1377891563 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007632_190 Hb_007632_190 Hb_003097_170 Hb_003097_170 Hb_007632_190--Hb_003097_170 Hb_000221_250 Hb_000221_250 Hb_007632_190--Hb_000221_250 Hb_001722_120 Hb_001722_120 Hb_007632_190--Hb_001722_120 Hb_001030_110 Hb_001030_110 Hb_007632_190--Hb_001030_110 Hb_011249_010 Hb_011249_010 Hb_007632_190--Hb_011249_010 Hb_005565_050 Hb_005565_050 Hb_007632_190--Hb_005565_050 Hb_004235_080 Hb_004235_080 Hb_003097_170--Hb_004235_080 Hb_000923_080 Hb_000923_080 Hb_003097_170--Hb_000923_080 Hb_003097_170--Hb_000221_250 Hb_000020_150 Hb_000020_150 Hb_003097_170--Hb_000020_150 Hb_004429_100 Hb_004429_100 Hb_003097_170--Hb_004429_100 Hb_003097_170--Hb_001030_110 Hb_000221_250--Hb_000020_150 Hb_011716_070 Hb_011716_070 Hb_000221_250--Hb_011716_070 Hb_001860_030 Hb_001860_030 Hb_000221_250--Hb_001860_030 Hb_004046_050 Hb_004046_050 Hb_000221_250--Hb_004046_050 Hb_007123_030 Hb_007123_030 Hb_000221_250--Hb_007123_030 Hb_001789_060 Hb_001789_060 Hb_001722_120--Hb_001789_060 Hb_000359_040 Hb_000359_040 Hb_001722_120--Hb_000359_040 Hb_002445_100 Hb_002445_100 Hb_001722_120--Hb_002445_100 Hb_004994_010 Hb_004994_010 Hb_001722_120--Hb_004994_010 Hb_002272_050 Hb_002272_050 Hb_001722_120--Hb_002272_050 Hb_000077_320 Hb_000077_320 Hb_001722_120--Hb_000077_320 Hb_000291_060 Hb_000291_060 Hb_001030_110--Hb_000291_060 Hb_154114_010 Hb_154114_010 Hb_001030_110--Hb_154114_010 Hb_000617_100 Hb_000617_100 Hb_001030_110--Hb_000617_100 Hb_000789_310 Hb_000789_310 Hb_001030_110--Hb_000789_310 Hb_002805_190 Hb_002805_190 Hb_001030_110--Hb_002805_190 Hb_001143_180 Hb_001143_180 Hb_001030_110--Hb_001143_180 Hb_011671_430 Hb_011671_430 Hb_011249_010--Hb_011671_430 Hb_001454_090 Hb_001454_090 Hb_011249_010--Hb_001454_090 Hb_000096_070 Hb_000096_070 Hb_011249_010--Hb_000096_070 Hb_000227_090 Hb_000227_090 Hb_011249_010--Hb_000227_090 Hb_014497_050 Hb_014497_050 Hb_011249_010--Hb_014497_050 Hb_007254_070 Hb_007254_070 Hb_011249_010--Hb_007254_070 Hb_000548_050 Hb_000548_050 Hb_005565_050--Hb_000548_050 Hb_000308_030 Hb_000308_030 Hb_005565_050--Hb_000308_030 Hb_031527_090 Hb_031527_090 Hb_005565_050--Hb_031527_090 Hb_001638_160 Hb_001638_160 Hb_005565_050--Hb_001638_160 Hb_000111_210 Hb_000111_210 Hb_005565_050--Hb_000111_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59795 5.42245 6.22496 2.55734 5.83854 6.03827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.07128 3.07959 3.17179 5.14568 1.76584

CAGE analysis