Hb_001454_090

Information

Type -
Description -
Location Contig1454: 63450-67674
Sequence    

Annotation

kegg
ID cit:102620033
description alanine--tRNA ligase, mitochondrial-like
nr
ID XP_012083931.1
description PREDICTED: alanyl-tRNA editing protein Aarsd1 isoform X1 [Jatropha curcas]
swissprot
ID O57734
description Alanyl-tRNA editing protein AlaX-L OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=alaXL PE=3 SV=1
trembl
ID A0A067K7K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18869 PE=4 SV=1
Gene Ontology
ID GO:0005737
description alanine-trna acid forming aminoacyl-trna and related binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11735: 63593-67431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_090 0.0 - - PREDICTED: alanyl-tRNA editing protein Aarsd1 isoform X1 [Jatropha curcas]
2 Hb_011249_010 0.0918154136 - - PREDICTED: N-alpha-acetyltransferase 35, NatC auxiliary subunit isoform X1 [Jatropha curcas]
3 Hb_000034_100 0.1000224572 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_000853_420 0.1023795802 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000096_070 0.1053701352 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
6 Hb_001386_120 0.1066354981 - - PREDICTED: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
7 Hb_000296_070 0.1069633711 - - hypothetical protein B456_003G048700 [Gossypium raimondii]
8 Hb_004491_010 0.1084804358 - - 60S ribosomal protein L51, putative [Ricinus communis]
9 Hb_002603_120 0.1153096861 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
10 Hb_002137_020 0.1158104953 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_000853_170 0.1160054461 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
12 Hb_000009_320 0.117638855 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66631 [Jatropha curcas]
13 Hb_007254_070 0.1186804808 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_002900_190 0.1189495726 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
15 Hb_003464_060 0.1192352465 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_003058_190 0.1199760658 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
17 Hb_004223_280 0.1203187396 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
18 Hb_000445_180 0.1232596153 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
19 Hb_000252_170 0.1236126911 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
20 Hb_005505_050 0.1237420482 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_090 Hb_001454_090 Hb_011249_010 Hb_011249_010 Hb_001454_090--Hb_011249_010 Hb_000034_100 Hb_000034_100 Hb_001454_090--Hb_000034_100 Hb_000853_420 Hb_000853_420 Hb_001454_090--Hb_000853_420 Hb_000096_070 Hb_000096_070 Hb_001454_090--Hb_000096_070 Hb_001386_120 Hb_001386_120 Hb_001454_090--Hb_001386_120 Hb_000296_070 Hb_000296_070 Hb_001454_090--Hb_000296_070 Hb_011671_430 Hb_011671_430 Hb_011249_010--Hb_011671_430 Hb_011249_010--Hb_000096_070 Hb_000227_090 Hb_000227_090 Hb_011249_010--Hb_000227_090 Hb_014497_050 Hb_014497_050 Hb_011249_010--Hb_014497_050 Hb_007254_070 Hb_007254_070 Hb_011249_010--Hb_007254_070 Hb_005276_210 Hb_005276_210 Hb_000034_100--Hb_005276_210 Hb_000487_110 Hb_000487_110 Hb_000034_100--Hb_000487_110 Hb_005694_110 Hb_005694_110 Hb_000034_100--Hb_005694_110 Hb_000034_100--Hb_000096_070 Hb_054865_100 Hb_054865_100 Hb_000034_100--Hb_054865_100 Hb_005245_130 Hb_005245_130 Hb_000034_100--Hb_005245_130 Hb_000853_170 Hb_000853_170 Hb_000853_420--Hb_000853_170 Hb_002603_120 Hb_002603_120 Hb_000853_420--Hb_002603_120 Hb_004491_010 Hb_004491_010 Hb_000853_420--Hb_004491_010 Hb_000853_420--Hb_011671_430 Hb_000613_090 Hb_000613_090 Hb_000853_420--Hb_000613_090 Hb_001006_140 Hb_001006_140 Hb_000853_420--Hb_001006_140 Hb_000016_250 Hb_000016_250 Hb_000096_070--Hb_000016_250 Hb_002518_280 Hb_002518_280 Hb_000096_070--Hb_002518_280 Hb_003058_190 Hb_003058_190 Hb_000096_070--Hb_003058_190 Hb_000563_320 Hb_000563_320 Hb_000096_070--Hb_000563_320 Hb_002248_080 Hb_002248_080 Hb_000096_070--Hb_002248_080 Hb_002900_190 Hb_002900_190 Hb_001386_120--Hb_002900_190 Hb_001386_120--Hb_004491_010 Hb_001584_330 Hb_001584_330 Hb_001386_120--Hb_001584_330 Hb_000638_080 Hb_000638_080 Hb_001386_120--Hb_000638_080 Hb_012022_030 Hb_012022_030 Hb_001386_120--Hb_012022_030 Hb_001604_010 Hb_001604_010 Hb_001386_120--Hb_001604_010 Hb_000252_170 Hb_000252_170 Hb_000296_070--Hb_000252_170 Hb_000296_070--Hb_007254_070 Hb_002903_060 Hb_002903_060 Hb_000296_070--Hb_002903_060 Hb_000123_210 Hb_000123_210 Hb_000296_070--Hb_000123_210 Hb_000907_110 Hb_000907_110 Hb_000296_070--Hb_000907_110 Hb_120327_010 Hb_120327_010 Hb_000296_070--Hb_120327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7611 25.3075 13.6165 5.27336 36.666 21.3524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0641 24.6333 26.3157 22.6492 9.97879

CAGE analysis