Hb_089437_010

Information

Type -
Description -
Location Contig89437: 772-1000
Sequence    

Annotation

kegg
ID rcu:RCOM_0444630
description RNA-binding protein, putative
nr
ID XP_012072250.1
description PREDICTED: polyadenylate-binding protein-interacting protein 10-like isoform X3 [Jatropha curcas]
swissprot
ID Q9LPI5
description Polyadenylate-binding protein-interacting protein 11 OS=Arabidopsis thaliana GN=CID11 PE=2 SV=1
trembl
ID A0A067JW96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00145 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ctc-interacting domain 11 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089437_010 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 10-like isoform X3 [Jatropha curcas]
2 Hb_000208_030 0.2237155905 - - -
3 Hb_001277_210 0.2716196747 - - -
4 Hb_011030_030 0.2739988071 - - PLC-like phosphodiesterases superfamily protein [Theobroma cacao]
5 Hb_003416_050 0.3343687293 - - -
6 Hb_036790_090 0.3409008796 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000275_180 0.3428257129 - - -
8 Hb_012033_020 0.3467036055 - - -
9 Hb_000264_290 0.3529007836 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
10 Hb_078604_010 0.3531729204 - - -
11 Hb_001377_400 0.3562845692 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_103790_010 0.3615156099 - - PREDICTED: pre-mRNA-processing protein 40A isoform X4 [Jatropha curcas]
13 Hb_001246_140 0.3627374041 - - -
14 Hb_012135_010 0.3679056444 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_004712_170 0.3746856134 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
16 Hb_092449_010 0.3757565045 - - -
17 Hb_000789_070 0.3781988996 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006541_090 0.3800702817 - - hypothetical protein VITISV_020777 [Vitis vinifera]
19 Hb_000803_040 0.3804136585 - - -
20 Hb_188209_010 0.3812910363 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_089437_010 Hb_089437_010 Hb_000208_030 Hb_000208_030 Hb_089437_010--Hb_000208_030 Hb_001277_210 Hb_001277_210 Hb_089437_010--Hb_001277_210 Hb_011030_030 Hb_011030_030 Hb_089437_010--Hb_011030_030 Hb_003416_050 Hb_003416_050 Hb_089437_010--Hb_003416_050 Hb_036790_090 Hb_036790_090 Hb_089437_010--Hb_036790_090 Hb_000275_180 Hb_000275_180 Hb_089437_010--Hb_000275_180 Hb_000208_030--Hb_011030_030 Hb_000208_030--Hb_001277_210 Hb_012033_020 Hb_012033_020 Hb_000208_030--Hb_012033_020 Hb_000803_040 Hb_000803_040 Hb_000208_030--Hb_000803_040 Hb_004525_060 Hb_004525_060 Hb_000208_030--Hb_004525_060 Hb_092449_010 Hb_092449_010 Hb_001277_210--Hb_092449_010 Hb_012135_010 Hb_012135_010 Hb_001277_210--Hb_012135_010 Hb_001369_260 Hb_001369_260 Hb_001277_210--Hb_001369_260 Hb_000260_150 Hb_000260_150 Hb_001277_210--Hb_000260_150 Hb_011030_030--Hb_003416_050 Hb_005269_030 Hb_005269_030 Hb_011030_030--Hb_005269_030 Hb_027428_030 Hb_027428_030 Hb_011030_030--Hb_027428_030 Hb_000482_060 Hb_000482_060 Hb_011030_030--Hb_000482_060 Hb_001001_100 Hb_001001_100 Hb_003416_050--Hb_001001_100 Hb_068804_040 Hb_068804_040 Hb_003416_050--Hb_068804_040 Hb_000032_060 Hb_000032_060 Hb_003416_050--Hb_000032_060 Hb_002272_040 Hb_002272_040 Hb_003416_050--Hb_002272_040 Hb_177132_010 Hb_177132_010 Hb_003416_050--Hb_177132_010 Hb_000568_060 Hb_000568_060 Hb_036790_090--Hb_000568_060 Hb_000029_080 Hb_000029_080 Hb_036790_090--Hb_000029_080 Hb_002157_130 Hb_002157_130 Hb_036790_090--Hb_002157_130 Hb_002048_030 Hb_002048_030 Hb_036790_090--Hb_002048_030 Hb_123199_010 Hb_123199_010 Hb_036790_090--Hb_123199_010 Hb_036790_090--Hb_012135_010 Hb_005565_050 Hb_005565_050 Hb_000275_180--Hb_005565_050 Hb_000789_070 Hb_000789_070 Hb_000275_180--Hb_000789_070 Hb_001541_270 Hb_001541_270 Hb_000275_180--Hb_001541_270 Hb_022092_120 Hb_022092_120 Hb_000275_180--Hb_022092_120 Hb_000264_290 Hb_000264_290 Hb_000275_180--Hb_000264_290 Hb_188209_010 Hb_188209_010 Hb_000275_180--Hb_188209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 652.411 552.902 0 232.843 575.876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
557.784 383.458 0 0 0

CAGE analysis