Hb_002048_030

Information

Type -
Description -
Location Contig2048: 34518-37539
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35600g
description hypothetical protein
nr
ID XP_012085318.1
description PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
swissprot
ID Q9SV68
description Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1
trembl
ID A0A067LDJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15148 PE=4 SV=1
Gene Ontology
ID GO:0043231
description quinone-oxidoreductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002048_030 0.0 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
2 Hb_007894_210 0.1737161987 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
3 Hb_001623_100 0.1804766401 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
4 Hb_000123_140 0.1862674915 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
5 Hb_143766_020 0.1916511564 - - putative phospholipase A2 [Gossypium arboreum]
6 Hb_010367_030 0.1932605243 - - conserved hypothetical protein [Ricinus communis]
7 Hb_015292_040 0.1937126541 - - PREDICTED: myb-like protein X [Jatropha curcas]
8 Hb_007263_010 0.1946801629 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_001675_300 0.1965326955 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
10 Hb_001699_210 0.1970585926 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
11 Hb_029584_040 0.1972941814 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
12 Hb_001839_020 0.1977878504 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
13 Hb_000211_040 0.1986559652 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_000538_130 0.1990874977 - - phytoene synthase 2 [Manihot esculenta]
15 Hb_001195_270 0.1995928571 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
16 Hb_030545_010 0.2007648597 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
17 Hb_002284_210 0.2029655199 - - PREDICTED: protein canopy-1 [Jatropha curcas]
18 Hb_010098_020 0.203321094 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_000905_120 0.2061876334 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
20 Hb_004994_080 0.2073907861 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002048_030 Hb_002048_030 Hb_007894_210 Hb_007894_210 Hb_002048_030--Hb_007894_210 Hb_001623_100 Hb_001623_100 Hb_002048_030--Hb_001623_100 Hb_000123_140 Hb_000123_140 Hb_002048_030--Hb_000123_140 Hb_143766_020 Hb_143766_020 Hb_002048_030--Hb_143766_020 Hb_010367_030 Hb_010367_030 Hb_002048_030--Hb_010367_030 Hb_015292_040 Hb_015292_040 Hb_002048_030--Hb_015292_040 Hb_005389_100 Hb_005389_100 Hb_007894_210--Hb_005389_100 Hb_001699_210 Hb_001699_210 Hb_007894_210--Hb_001699_210 Hb_001005_160 Hb_001005_160 Hb_007894_210--Hb_001005_160 Hb_001322_020 Hb_001322_020 Hb_007894_210--Hb_001322_020 Hb_007894_210--Hb_015292_040 Hb_163591_010 Hb_163591_010 Hb_007894_210--Hb_163591_010 Hb_004129_090 Hb_004129_090 Hb_001623_100--Hb_004129_090 Hb_014497_100 Hb_014497_100 Hb_001623_100--Hb_014497_100 Hb_002316_140 Hb_002316_140 Hb_001623_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_001623_100--Hb_001178_010 Hb_010098_020 Hb_010098_020 Hb_001623_100--Hb_010098_020 Hb_002972_010 Hb_002972_010 Hb_001623_100--Hb_002972_010 Hb_000211_040 Hb_000211_040 Hb_000123_140--Hb_000211_040 Hb_000959_190 Hb_000959_190 Hb_000123_140--Hb_000959_190 Hb_000123_140--Hb_001322_020 Hb_155025_010 Hb_155025_010 Hb_000123_140--Hb_155025_010 Hb_000120_350 Hb_000120_350 Hb_000123_140--Hb_000120_350 Hb_006935_040 Hb_006935_040 Hb_000123_140--Hb_006935_040 Hb_000012_270 Hb_000012_270 Hb_143766_020--Hb_000012_270 Hb_002284_210 Hb_002284_210 Hb_143766_020--Hb_002284_210 Hb_000959_220 Hb_000959_220 Hb_143766_020--Hb_000959_220 Hb_000663_020 Hb_000663_020 Hb_143766_020--Hb_000663_020 Hb_002874_180 Hb_002874_180 Hb_143766_020--Hb_002874_180 Hb_003760_030 Hb_003760_030 Hb_143766_020--Hb_003760_030 Hb_028207_020 Hb_028207_020 Hb_010367_030--Hb_028207_020 Hb_178968_140 Hb_178968_140 Hb_010367_030--Hb_178968_140 Hb_001328_030 Hb_001328_030 Hb_010367_030--Hb_001328_030 Hb_002986_080 Hb_002986_080 Hb_010367_030--Hb_002986_080 Hb_003861_070 Hb_003861_070 Hb_010367_030--Hb_003861_070 Hb_065755_030 Hb_065755_030 Hb_010367_030--Hb_065755_030 Hb_004994_080 Hb_004994_080 Hb_015292_040--Hb_004994_080 Hb_015292_040--Hb_000211_040 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_015292_040--Hb_000663_020 Hb_001839_020 Hb_001839_020 Hb_015292_040--Hb_001839_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.34855 0.495706 2.67154 0.960554 1.09202 0.82627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.618122 1.09383 0.0745031 0.032594 0.827992

CAGE analysis