Hb_004525_060

Information

Type -
Description -
Location Contig4525: 29874-37494
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43222: 22185-44706 , PASA_asmbl_43226: 33716-33861 , PASA_asmbl_43229: 24119-30010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004525_060 0.0 - - -
2 Hb_000454_060 0.1942050004 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
3 Hb_009780_080 0.2512448181 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
4 Hb_000048_020 0.2628413304 - - -
5 Hb_010288_040 0.2721135465 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
6 Hb_096224_020 0.2735247468 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
7 Hb_132998_020 0.2745253209 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
8 Hb_001232_120 0.2837923168 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
9 Hb_001504_120 0.2889357402 - - -
10 Hb_012807_010 0.2907832978 - - -
11 Hb_000208_030 0.2993455543 - - -
12 Hb_003994_170 0.3120135197 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]
13 Hb_000693_020 0.3137924339 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
14 Hb_000482_060 0.315702403 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
15 Hb_008289_050 0.3244936539 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
16 Hb_026747_020 0.3256906905 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001894_090 0.3305319569 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
18 Hb_004195_180 0.3323115254 - - unnamed protein product [Coffea canephora]
19 Hb_003398_030 0.33268463 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
20 Hb_002267_080 0.3336785122 - - PREDICTED: uncharacterized protein LOC105635094 [Jatropha curcas]

Gene co-expression network

sample Hb_004525_060 Hb_004525_060 Hb_000454_060 Hb_000454_060 Hb_004525_060--Hb_000454_060 Hb_009780_080 Hb_009780_080 Hb_004525_060--Hb_009780_080 Hb_000048_020 Hb_000048_020 Hb_004525_060--Hb_000048_020 Hb_010288_040 Hb_010288_040 Hb_004525_060--Hb_010288_040 Hb_096224_020 Hb_096224_020 Hb_004525_060--Hb_096224_020 Hb_132998_020 Hb_132998_020 Hb_004525_060--Hb_132998_020 Hb_000454_060--Hb_132998_020 Hb_021888_050 Hb_021888_050 Hb_000454_060--Hb_021888_050 Hb_001504_120 Hb_001504_120 Hb_000454_060--Hb_001504_120 Hb_000454_060--Hb_009780_080 Hb_000317_400 Hb_000317_400 Hb_000454_060--Hb_000317_400 Hb_009780_080--Hb_132998_020 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_079268_010 Hb_079268_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_001232_120 Hb_001232_120 Hb_000048_020--Hb_001232_120 Hb_008289_050 Hb_008289_050 Hb_000048_020--Hb_008289_050 Hb_021943_030 Hb_021943_030 Hb_000048_020--Hb_021943_030 Hb_000048_020--Hb_010288_040 Hb_027472_230 Hb_027472_230 Hb_000048_020--Hb_027472_230 Hb_004732_010 Hb_004732_010 Hb_010288_040--Hb_004732_010 Hb_005779_050 Hb_005779_050 Hb_010288_040--Hb_005779_050 Hb_007105_010 Hb_007105_010 Hb_010288_040--Hb_007105_010 Hb_002180_010 Hb_002180_010 Hb_010288_040--Hb_002180_010 Hb_010288_040--Hb_000454_060 Hb_006907_120 Hb_006907_120 Hb_010288_040--Hb_006907_120 Hb_002282_040 Hb_002282_040 Hb_096224_020--Hb_002282_040 Hb_109268_010 Hb_109268_010 Hb_096224_020--Hb_109268_010 Hb_128051_010 Hb_128051_010 Hb_096224_020--Hb_128051_010 Hb_096224_020--Hb_005779_050 Hb_003020_080 Hb_003020_080 Hb_096224_020--Hb_003020_080 Hb_132998_020--Hb_079268_010 Hb_003446_050 Hb_003446_050 Hb_132998_020--Hb_003446_050 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_000326_060 Hb_000326_060 Hb_132998_020--Hb_000326_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113863 0.0308924 0 0.0183255 0.0381522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134151 0.105519 0 0.141123 0

CAGE analysis