Hb_000331_650

Information

Type -
Description -
Location Contig331: 503292-504568
Sequence    

Annotation

kegg
ID pop:POPTR_0012s09290g
description POPTRDRAFT_422117; methionine sulfoxide reductase family protein
nr
ID XP_012079937.1
description PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
swissprot
ID P54153
description Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1
trembl
ID A0A067K443
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11372 PE=3 SV=1
Gene Ontology
ID GO:0008113
description peptide methionine sulfoxide reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34824: 503267-504500
cDNA
(Sanger)
(ID:Location)		 004_D13.ab1: 503513-504500 , 008_J15.ab1: 503512-504434 , 039_M04.ab1: 503515-504111 , 047_O16.ab1: 503513-504450 , 048_C17.ab1: 503502-504451

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_650 0.0 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
2 Hb_000329_750 0.1138209066 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
3 Hb_004162_090 0.1195054922 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
4 Hb_002000_070 0.1222599778 - - PREDICTED: LOW QUALITY PROTEIN: 5-formyltetrahydrofolate cyclo-ligase-like protein COG0212 [Jatropha curcas]
5 Hb_027346_010 0.1229129061 - - -
6 Hb_006816_430 0.1233115196 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_004117_140 0.1263006847 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
8 Hb_005539_090 0.1298512607 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
9 Hb_003203_030 0.1307299567 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
10 Hb_000012_140 0.1318603122 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001205_230 0.1321619562 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
12 Hb_005348_010 0.1332210639 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000046_190 0.1336480013 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
14 Hb_000041_090 0.133731643 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
15 Hb_021443_040 0.1358317611 - - acc synthase, putative [Ricinus communis]
16 Hb_001123_260 0.1366963149 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
17 Hb_000265_230 0.1372876525 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
18 Hb_000007_010 0.138289252 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
19 Hb_003929_110 0.1397604319 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_004108_100 0.1402585746 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_650 Hb_000331_650 Hb_000329_750 Hb_000329_750 Hb_000331_650--Hb_000329_750 Hb_004162_090 Hb_004162_090 Hb_000331_650--Hb_004162_090 Hb_002000_070 Hb_002000_070 Hb_000331_650--Hb_002000_070 Hb_027346_010 Hb_027346_010 Hb_000331_650--Hb_027346_010 Hb_006816_430 Hb_006816_430 Hb_000331_650--Hb_006816_430 Hb_004117_140 Hb_004117_140 Hb_000331_650--Hb_004117_140 Hb_005348_010 Hb_005348_010 Hb_000329_750--Hb_005348_010 Hb_003805_050 Hb_003805_050 Hb_000329_750--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_000329_750--Hb_006295_020 Hb_005488_170 Hb_005488_170 Hb_000329_750--Hb_005488_170 Hb_003203_030 Hb_003203_030 Hb_000329_750--Hb_003203_030 Hb_002909_120 Hb_002909_120 Hb_000329_750--Hb_002909_120 Hb_001638_270 Hb_001638_270 Hb_004162_090--Hb_001638_270 Hb_000035_290 Hb_000035_290 Hb_004162_090--Hb_000035_290 Hb_001205_230 Hb_001205_230 Hb_004162_090--Hb_001205_230 Hb_004162_090--Hb_027346_010 Hb_005699_090 Hb_005699_090 Hb_004162_090--Hb_005699_090 Hb_025194_040 Hb_025194_040 Hb_004162_090--Hb_025194_040 Hb_029977_040 Hb_029977_040 Hb_002000_070--Hb_029977_040 Hb_001617_040 Hb_001617_040 Hb_002000_070--Hb_001617_040 Hb_000398_020 Hb_000398_020 Hb_002000_070--Hb_000398_020 Hb_000025_710 Hb_000025_710 Hb_002000_070--Hb_000025_710 Hb_000679_330 Hb_000679_330 Hb_002000_070--Hb_000679_330 Hb_000003_190 Hb_000003_190 Hb_002000_070--Hb_000003_190 Hb_027346_010--Hb_001205_230 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_009486_060 Hb_009486_060 Hb_027346_010--Hb_009486_060 Hb_000281_090 Hb_000281_090 Hb_027346_010--Hb_000281_090 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_006816_430--Hb_004117_140 Hb_004117_140--Hb_027346_010 Hb_004117_140--Hb_000291_050 Hb_004117_140--Hb_000281_090 Hb_000574_400 Hb_000574_400 Hb_004117_140--Hb_000574_400 Hb_004117_140--Hb_001205_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.269 163.253 33.1452 47.1104 112.799 80.2903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.864 52.7511 55.1547 71.1627 187.151

CAGE analysis