Hb_040290_010

Information

Type -
Description -
Location Contig40290: 1269-2656
Sequence    

Annotation

kegg
ID vvi:104880542
description uncharacterized LOC104880542
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC104227769, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040290_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_080085_010 0.2464519017 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_001172_080 0.2889979084 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
4 Hb_011639_150 0.2964238919 - - -
5 Hb_161709_010 0.3009670784 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_001235_100 0.301736456 - - heat-shock protein, putative [Ricinus communis]
7 Hb_093245_010 0.3080125098 - - -
8 Hb_002311_230 0.308190861 - - -
9 Hb_008556_020 0.3096594107 - - -
10 Hb_114988_010 0.3106761144 - - -
11 Hb_000078_170 0.318631388 - - -
12 Hb_005962_010 0.3233218688 - - -
13 Hb_002637_020 0.3267909853 - - -
14 Hb_000770_030 0.3281709155 - - -
15 Hb_006054_050 0.329643662 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
16 Hb_119886_040 0.3304440914 - - -
17 Hb_002235_290 0.3339265648 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
18 Hb_002988_030 0.3367321965 - - hypothetical protein EUGRSUZ_K02073 [Eucalyptus grandis]
19 Hb_001766_040 0.3367384231 - - chaperone clpb, putative [Ricinus communis]
20 Hb_148392_010 0.339345861 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_040290_010 Hb_040290_010 Hb_080085_010 Hb_080085_010 Hb_040290_010--Hb_080085_010 Hb_001172_080 Hb_001172_080 Hb_040290_010--Hb_001172_080 Hb_011639_150 Hb_011639_150 Hb_040290_010--Hb_011639_150 Hb_161709_010 Hb_161709_010 Hb_040290_010--Hb_161709_010 Hb_001235_100 Hb_001235_100 Hb_040290_010--Hb_001235_100 Hb_093245_010 Hb_093245_010 Hb_040290_010--Hb_093245_010 Hb_033661_010 Hb_033661_010 Hb_080085_010--Hb_033661_010 Hb_103362_010 Hb_103362_010 Hb_080085_010--Hb_103362_010 Hb_058722_010 Hb_058722_010 Hb_080085_010--Hb_058722_010 Hb_001377_250 Hb_001377_250 Hb_080085_010--Hb_001377_250 Hb_001277_230 Hb_001277_230 Hb_080085_010--Hb_001277_230 Hb_000445_300 Hb_000445_300 Hb_001172_080--Hb_000445_300 Hb_000032_310 Hb_000032_310 Hb_001172_080--Hb_000032_310 Hb_000105_020 Hb_000105_020 Hb_001172_080--Hb_000105_020 Hb_012565_080 Hb_012565_080 Hb_001172_080--Hb_012565_080 Hb_000521_170 Hb_000521_170 Hb_001172_080--Hb_000521_170 Hb_000120_970 Hb_000120_970 Hb_001172_080--Hb_000120_970 Hb_000078_170 Hb_000078_170 Hb_011639_150--Hb_000078_170 Hb_005962_010 Hb_005962_010 Hb_011639_150--Hb_005962_010 Hb_008556_020 Hb_008556_020 Hb_011639_150--Hb_008556_020 Hb_001709_130 Hb_001709_130 Hb_011639_150--Hb_001709_130 Hb_119886_040 Hb_119886_040 Hb_011639_150--Hb_119886_040 Hb_002311_230 Hb_002311_230 Hb_011639_150--Hb_002311_230 Hb_055773_010 Hb_055773_010 Hb_161709_010--Hb_055773_010 Hb_000879_130 Hb_000879_130 Hb_161709_010--Hb_000879_130 Hb_011457_110 Hb_011457_110 Hb_161709_010--Hb_011457_110 Hb_043668_010 Hb_043668_010 Hb_161709_010--Hb_043668_010 Hb_053337_010 Hb_053337_010 Hb_161709_010--Hb_053337_010 Hb_049483_010 Hb_049483_010 Hb_161709_010--Hb_049483_010 Hb_020094_020 Hb_020094_020 Hb_001235_100--Hb_020094_020 Hb_000062_110 Hb_000062_110 Hb_001235_100--Hb_000062_110 Hb_001369_370 Hb_001369_370 Hb_001235_100--Hb_001369_370 Hb_000483_180 Hb_000483_180 Hb_001235_100--Hb_000483_180 Hb_001235_100--Hb_005962_010 Hb_000488_010 Hb_000488_010 Hb_001235_100--Hb_000488_010 Hb_021888_150 Hb_021888_150 Hb_093245_010--Hb_021888_150 Hb_093245_010--Hb_002311_230 Hb_101151_020 Hb_101151_020 Hb_093245_010--Hb_101151_020 Hb_000770_030 Hb_000770_030 Hb_093245_010--Hb_000770_030 Hb_002783_050 Hb_002783_050 Hb_093245_010--Hb_002783_050 Hb_000116_570 Hb_000116_570 Hb_093245_010--Hb_000116_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0796776 0.100534 0 0 0.111389 0.0469953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0603963 0 0.0120869 0.125308

CAGE analysis