Hb_043668_010

Information

Type -
Description -
Location Contig43668: 7-888
Sequence    

Annotation

kegg
ID rcu:RCOM_1101270
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002528032.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9C9I6
description Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
trembl
ID B9SPW3
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1101270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043668_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000317_150 0.097432912 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
3 Hb_002349_050 0.1016606082 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
4 Hb_007885_070 0.1051471294 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
5 Hb_000320_380 0.1077596818 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
6 Hb_003126_030 0.1088255364 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000313_340 0.1092651887 - - DNA repair protein xp-E, putative [Ricinus communis]
8 Hb_001946_300 0.1103909261 - - PREDICTED: F-box protein At-B [Jatropha curcas]
9 Hb_080147_030 0.1133890856 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
10 Hb_000685_080 0.1147415168 - - protein binding protein, putative [Ricinus communis]
11 Hb_161072_030 0.118081076 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
12 Hb_005725_020 0.1193974984 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Jatropha curcas]
13 Hb_000363_130 0.1197238467 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
14 Hb_005946_170 0.1201391556 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_003540_160 0.120158132 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
16 Hb_015475_020 0.1208852536 - - importin beta-1, putative [Ricinus communis]
17 Hb_002813_010 0.1212334583 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_015026_050 0.1214900148 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_140049_020 0.1228063644 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
20 Hb_002849_080 0.1231421946 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]

Gene co-expression network

sample Hb_043668_010 Hb_043668_010 Hb_000317_150 Hb_000317_150 Hb_043668_010--Hb_000317_150 Hb_002349_050 Hb_002349_050 Hb_043668_010--Hb_002349_050 Hb_007885_070 Hb_007885_070 Hb_043668_010--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_043668_010--Hb_000320_380 Hb_003126_030 Hb_003126_030 Hb_043668_010--Hb_003126_030 Hb_000313_340 Hb_000313_340 Hb_043668_010--Hb_000313_340 Hb_003540_160 Hb_003540_160 Hb_000317_150--Hb_003540_160 Hb_001117_190 Hb_001117_190 Hb_000317_150--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000317_150--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_000317_150--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_000317_150--Hb_005539_190 Hb_000317_150--Hb_000313_340 Hb_015475_020 Hb_015475_020 Hb_002349_050--Hb_015475_020 Hb_015026_050 Hb_015026_050 Hb_002349_050--Hb_015026_050 Hb_000813_100 Hb_000813_100 Hb_002349_050--Hb_000813_100 Hb_133047_010 Hb_133047_010 Hb_002349_050--Hb_133047_010 Hb_001221_160 Hb_001221_160 Hb_002349_050--Hb_001221_160 Hb_001946_300 Hb_001946_300 Hb_002349_050--Hb_001946_300 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_000529_260 Hb_000529_260 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_007885_070--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_007885_070--Hb_000424_010 Hb_000320_380--Hb_015026_050 Hb_000320_380--Hb_002221_050 Hb_000320_380--Hb_019153_020 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_102129_070 Hb_102129_070 Hb_003126_030--Hb_102129_070 Hb_000140_080 Hb_000140_080 Hb_003126_030--Hb_000140_080 Hb_008554_120 Hb_008554_120 Hb_003126_030--Hb_008554_120 Hb_000152_340 Hb_000152_340 Hb_003126_030--Hb_000152_340 Hb_000406_240 Hb_000406_240 Hb_003126_030--Hb_000406_240 Hb_000169_130 Hb_000169_130 Hb_003126_030--Hb_000169_130 Hb_000313_340--Hb_140049_020 Hb_000313_340--Hb_001946_300 Hb_000313_340--Hb_007885_070 Hb_004899_070 Hb_004899_070 Hb_000313_340--Hb_004899_070 Hb_000261_290 Hb_000261_290 Hb_000313_340--Hb_000261_290 Hb_000363_130 Hb_000363_130 Hb_000313_340--Hb_000363_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5983 14.1114 3.48397 2.54755 16.4342 10.1457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44559 3.59721 6.47615 3.11031 4.4477

CAGE analysis