Hb_001377_250

Information

Type -
Description -
Location Contig1377: 250360-258766
Sequence    

Annotation

kegg
ID rcu:RCOM_0718390
description dynamin, putative
nr
ID XP_002523347.1
description dynamin, putative [Ricinus communis]
swissprot
ID Q39828
description Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
trembl
ID B9SBH8
description Dynamin, putative OS=Ricinus communis GN=RCOM_0718390 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_250 0.0 - - dynamin, putative [Ricinus communis]
2 Hb_002233_020 0.1479100603 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_042175_010 0.1688175987 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
4 Hb_027337_090 0.1875092853 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
5 Hb_000866_370 0.1904005588 - - synaptotagmin, putative [Ricinus communis]
6 Hb_004631_130 0.1916079361 - - helicase domain-containing family protein [Populus trichocarpa]
7 Hb_003398_070 0.192290788 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
8 Hb_003060_090 0.1959529533 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
9 Hb_001027_010 0.1970360893 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0019s03720g [Populus trichocarpa]
10 Hb_014834_060 0.2035347928 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
11 Hb_001085_030 0.2044663046 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
12 Hb_103362_010 0.2078391057 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_011828_030 0.2097055174 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
14 Hb_002686_280 0.2129416328 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_029243_020 0.213302406 - - ENTH/VHS/GAT family protein [Theobroma cacao]
16 Hb_000261_150 0.2137748796 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000126_070 0.2145336856 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
18 Hb_000123_350 0.2159094682 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
19 Hb_000010_350 0.2172683577 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
20 Hb_003014_030 0.2188877657 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001377_250 Hb_001377_250 Hb_002233_020 Hb_002233_020 Hb_001377_250--Hb_002233_020 Hb_042175_010 Hb_042175_010 Hb_001377_250--Hb_042175_010 Hb_027337_090 Hb_027337_090 Hb_001377_250--Hb_027337_090 Hb_000866_370 Hb_000866_370 Hb_001377_250--Hb_000866_370 Hb_004631_130 Hb_004631_130 Hb_001377_250--Hb_004631_130 Hb_003398_070 Hb_003398_070 Hb_001377_250--Hb_003398_070 Hb_002233_020--Hb_000866_370 Hb_002233_020--Hb_003398_070 Hb_000010_350 Hb_000010_350 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_001141_360 Hb_001141_360 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_001863_150 Hb_001863_150 Hb_042175_010--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_042175_010--Hb_001865_060 Hb_042175_010--Hb_000010_350 Hb_000261_150 Hb_000261_150 Hb_027337_090--Hb_000261_150 Hb_001699_280 Hb_001699_280 Hb_027337_090--Hb_001699_280 Hb_001662_180 Hb_001662_180 Hb_027337_090--Hb_001662_180 Hb_000083_270 Hb_000083_270 Hb_027337_090--Hb_000083_270 Hb_188063_010 Hb_188063_010 Hb_027337_090--Hb_188063_010 Hb_002095_070 Hb_002095_070 Hb_027337_090--Hb_002095_070 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000866_370--Hb_000010_350 Hb_000866_370--Hb_089100_040 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_033642_070 Hb_033642_070 Hb_004631_130--Hb_033642_070 Hb_000189_470 Hb_000189_470 Hb_004631_130--Hb_000189_470 Hb_010921_020 Hb_010921_020 Hb_004631_130--Hb_010921_020 Hb_002475_130 Hb_002475_130 Hb_004631_130--Hb_002475_130 Hb_004631_130--Hb_089100_040 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_003398_070--Hb_002005_120 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.466217 2.65894 0.0804544 0.131153 0.491078 0.530522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308624 0.317547 0.212262 0.884733 1.14323

CAGE analysis