Hb_002233_020

Information

Type -
Description -
Location Contig2233: 11870-16206
Sequence    

Annotation

kegg
ID brp:103839132
description protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like
nr
ID KDP38817.1
description hypothetical protein JCGZ_04974 [Jatropha curcas]
swissprot
ID Q9XGM3
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_020 0.0 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
2 Hb_000866_370 0.1210781728 - - synaptotagmin, putative [Ricinus communis]
3 Hb_003398_070 0.1219727601 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
4 Hb_000010_350 0.1402682344 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
5 Hb_089100_040 0.146813106 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
6 Hb_001377_250 0.1479100603 - - dynamin, putative [Ricinus communis]
7 Hb_003060_090 0.1494884002 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
8 Hb_065500_030 0.1513794568 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
9 Hb_006132_020 0.1521110017 - - PREDICTED: U-box domain-containing protein 37-like isoform X1 [Populus euphratica]
10 Hb_009897_010 0.1567811529 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_014834_060 0.1589770997 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
12 Hb_002005_120 0.162553882 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
13 Hb_011828_030 0.1648904539 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
14 Hb_000123_350 0.165437483 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_000789_240 0.1659618209 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
16 Hb_004108_170 0.1690847342 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000022_180 0.1719910527 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
18 Hb_001662_180 0.1740703152 - - PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5 [Citrus sinensis]
19 Hb_000856_020 0.1741009864 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
20 Hb_042175_010 0.1779046318 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002233_020 Hb_002233_020 Hb_000866_370 Hb_000866_370 Hb_002233_020--Hb_000866_370 Hb_003398_070 Hb_003398_070 Hb_002233_020--Hb_003398_070 Hb_000010_350 Hb_000010_350 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000866_370--Hb_000010_350 Hb_000866_370--Hb_089100_040 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_002005_120 Hb_002005_120 Hb_003398_070--Hb_002005_120 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140 Hb_000062_080 Hb_000062_080 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_000010_350--Hb_089100_040 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_089100_040--Hb_065500_030 Hb_042175_010 Hb_042175_010 Hb_001377_250--Hb_042175_010 Hb_027337_090 Hb_027337_090 Hb_001377_250--Hb_027337_090 Hb_001377_250--Hb_000866_370 Hb_004631_130 Hb_004631_130 Hb_001377_250--Hb_004631_130 Hb_001377_250--Hb_003398_070 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.352687 3.71201 0.295243 0.569304 0.592068 1.03887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.467414 0.183878 0.270215 1.24524 1.20417

CAGE analysis