Hb_000770_030

Information

Type -
Description -
Location Contig770: 42650-50681
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000770_030 0.0 - - -
2 Hb_002276_050 0.1309165357 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
3 Hb_009767_090 0.1448501455 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003216_120 0.1517780267 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
5 Hb_000422_140 0.1596391464 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
6 Hb_004899_030 0.1612205644 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
7 Hb_021888_150 0.1620514592 - - -
8 Hb_004635_080 0.1644357111 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_009851_110 0.1655811251 - - structural constituent of ribosome, putative [Ricinus communis]
10 Hb_001474_030 0.1656595863 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_027073_060 0.166184525 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
12 Hb_009558_040 0.1670819216 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
13 Hb_002084_040 0.1676218615 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
14 Hb_148392_010 0.1677980492 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_073171_080 0.1679575425 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
16 Hb_028707_090 0.1722686912 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
17 Hb_002301_270 0.1726133379 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
18 Hb_000107_170 0.1727260623 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
19 Hb_144787_030 0.1733809922 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
20 Hb_000291_120 0.1739756885 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000770_030 Hb_000770_030 Hb_002276_050 Hb_002276_050 Hb_000770_030--Hb_002276_050 Hb_009767_090 Hb_009767_090 Hb_000770_030--Hb_009767_090 Hb_003216_120 Hb_003216_120 Hb_000770_030--Hb_003216_120 Hb_000422_140 Hb_000422_140 Hb_000770_030--Hb_000422_140 Hb_004899_030 Hb_004899_030 Hb_000770_030--Hb_004899_030 Hb_021888_150 Hb_021888_150 Hb_000770_030--Hb_021888_150 Hb_001474_030 Hb_001474_030 Hb_002276_050--Hb_001474_030 Hb_073171_080 Hb_073171_080 Hb_002276_050--Hb_073171_080 Hb_033594_020 Hb_033594_020 Hb_002276_050--Hb_033594_020 Hb_002675_040 Hb_002675_040 Hb_002276_050--Hb_002675_040 Hb_000236_280 Hb_000236_280 Hb_002276_050--Hb_000236_280 Hb_000104_080 Hb_000104_080 Hb_002276_050--Hb_000104_080 Hb_000640_320 Hb_000640_320 Hb_009767_090--Hb_000640_320 Hb_000058_040 Hb_000058_040 Hb_009767_090--Hb_000058_040 Hb_000540_150 Hb_000540_150 Hb_009767_090--Hb_000540_150 Hb_005237_060 Hb_005237_060 Hb_009767_090--Hb_005237_060 Hb_028707_090 Hb_028707_090 Hb_009767_090--Hb_028707_090 Hb_002043_170 Hb_002043_170 Hb_009767_090--Hb_002043_170 Hb_003216_120--Hb_004899_030 Hb_000024_070 Hb_000024_070 Hb_003216_120--Hb_000024_070 Hb_000809_210 Hb_000809_210 Hb_003216_120--Hb_000809_210 Hb_003216_120--Hb_028707_090 Hb_000363_380 Hb_000363_380 Hb_003216_120--Hb_000363_380 Hb_008246_030 Hb_008246_030 Hb_003216_120--Hb_008246_030 Hb_005895_040 Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000422_140--Hb_002477_130 Hb_004899_030--Hb_028707_090 Hb_009851_110 Hb_009851_110 Hb_004899_030--Hb_009851_110 Hb_002301_270 Hb_002301_270 Hb_004899_030--Hb_002301_270 Hb_004899_030--Hb_005895_040 Hb_001396_290 Hb_001396_290 Hb_004899_030--Hb_001396_290 Hb_001473_080 Hb_001473_080 Hb_004899_030--Hb_001473_080 Hb_000116_570 Hb_000116_570 Hb_021888_150--Hb_000116_570 Hb_003106_150 Hb_003106_150 Hb_021888_150--Hb_003106_150 Hb_000504_160 Hb_000504_160 Hb_021888_150--Hb_000504_160 Hb_002477_150 Hb_002477_150 Hb_021888_150--Hb_002477_150 Hb_010883_080 Hb_010883_080 Hb_021888_150--Hb_010883_080 Hb_002849_080 Hb_002849_080 Hb_021888_150--Hb_002849_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.905404 0.66316 0.255359 0.0743349 1.25643 0.898725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.284952 0.425959 0.168975 0.0625758 0.564615

CAGE analysis