Hb_103362_010

Information

Type -
Description -
Location Contig103362: 47-930
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103362_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000656_060 0.1313253444 - - DNA binding protein, putative [Ricinus communis]
3 Hb_001726_050 0.1399962196 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
4 Hb_000110_270 0.1403157412 - - prp4, putative [Ricinus communis]
5 Hb_000329_750 0.1423450341 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
6 Hb_011021_050 0.1432559227 - - PREDICTED: uncharacterized protein LOC105644387 isoform X1 [Jatropha curcas]
7 Hb_000672_040 0.1447971835 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
8 Hb_000261_150 0.1451071369 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001080_090 0.1455011435 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
10 Hb_001726_100 0.1462499795 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
11 Hb_006816_370 0.1475603759 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
12 Hb_000007_010 0.1511541662 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
13 Hb_000619_030 0.1515177153 - - unnamed protein product [Vitis vinifera]
14 Hb_004117_140 0.1520252915 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
15 Hb_000856_070 0.1523809304 - - PREDICTED: formin-like protein 5 [Jatropha curcas]
16 Hb_000614_150 0.1527630537 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
17 Hb_005186_040 0.1536170844 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
18 Hb_027337_090 0.1548191545 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
19 Hb_011671_410 0.1558456546 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
20 Hb_007575_080 0.1599613595 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_103362_010 Hb_103362_010 Hb_000656_060 Hb_000656_060 Hb_103362_010--Hb_000656_060 Hb_001726_050 Hb_001726_050 Hb_103362_010--Hb_001726_050 Hb_000110_270 Hb_000110_270 Hb_103362_010--Hb_000110_270 Hb_000329_750 Hb_000329_750 Hb_103362_010--Hb_000329_750 Hb_011021_050 Hb_011021_050 Hb_103362_010--Hb_011021_050 Hb_000672_040 Hb_000672_040 Hb_103362_010--Hb_000672_040 Hb_005186_040 Hb_005186_040 Hb_000656_060--Hb_005186_040 Hb_000656_060--Hb_011021_050 Hb_000656_060--Hb_001726_050 Hb_000261_150 Hb_000261_150 Hb_000656_060--Hb_000261_150 Hb_001726_100 Hb_001726_100 Hb_000656_060--Hb_001726_100 Hb_000856_070 Hb_000856_070 Hb_000656_060--Hb_000856_070 Hb_001726_050--Hb_001726_100 Hb_005488_170 Hb_005488_170 Hb_001726_050--Hb_005488_170 Hb_099270_030 Hb_099270_030 Hb_001726_050--Hb_099270_030 Hb_001726_050--Hb_005186_040 Hb_002909_120 Hb_002909_120 Hb_001726_050--Hb_002909_120 Hb_000110_270--Hb_001726_100 Hb_000363_300 Hb_000363_300 Hb_000110_270--Hb_000363_300 Hb_000110_270--Hb_005488_170 Hb_005211_020 Hb_005211_020 Hb_000110_270--Hb_005211_020 Hb_004306_120 Hb_004306_120 Hb_000110_270--Hb_004306_120 Hb_012244_020 Hb_012244_020 Hb_000110_270--Hb_012244_020 Hb_005348_010 Hb_005348_010 Hb_000329_750--Hb_005348_010 Hb_003805_050 Hb_003805_050 Hb_000329_750--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_000329_750--Hb_006295_020 Hb_000329_750--Hb_005488_170 Hb_003203_030 Hb_003203_030 Hb_000329_750--Hb_003203_030 Hb_000329_750--Hb_002909_120 Hb_011021_050--Hb_004306_120 Hb_005408_030 Hb_005408_030 Hb_011021_050--Hb_005408_030 Hb_002609_080 Hb_002609_080 Hb_011021_050--Hb_002609_080 Hb_000009_410 Hb_000009_410 Hb_011021_050--Hb_000009_410 Hb_011021_050--Hb_005186_040 Hb_000672_040--Hb_005186_040 Hb_007441_160 Hb_007441_160 Hb_000672_040--Hb_007441_160 Hb_005736_020 Hb_005736_020 Hb_000672_040--Hb_005736_020 Hb_001227_080 Hb_001227_080 Hb_000672_040--Hb_001227_080 Hb_011671_410 Hb_011671_410 Hb_000672_040--Hb_011671_410 Hb_005486_030 Hb_005486_030 Hb_000672_040--Hb_005486_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0907516 0.350165 0.0431798 0.0741386 0.106428 0.147797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12817 0.151177 0.0914738 0.142591 0.406168

CAGE analysis