Hb_053337_010

Information

Type -
Description -
Location Contig53337: 3213-4277
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053337_010 0.0 - - -
2 Hb_000977_070 0.168095514 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
3 Hb_002026_110 0.1685764416 - - protein binding protein, putative [Ricinus communis]
4 Hb_001141_330 0.17115823 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
5 Hb_000125_120 0.1746381283 transcription factor TF Family: mTERF -
6 Hb_004129_130 0.1766537569 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_063100_010 0.177098789 - - TATA box-binding protein-associated factor [Populus trichocarpa]
8 Hb_004117_030 0.1779111192 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
9 Hb_001538_010 0.1803733578 - - -
10 Hb_124315_020 0.184509436 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000500_040 0.1858645855 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005883_030 0.1865421531 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
13 Hb_001009_310 0.1868134008 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
14 Hb_000890_040 0.186826078 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
15 Hb_012670_140 0.1892132307 - - PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Jatropha curcas]
16 Hb_001274_020 0.1902082506 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_001245_070 0.1904764517 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_006573_200 0.1927027848 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
19 Hb_000776_110 0.1936002912 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
20 Hb_000808_180 0.1944939811 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]

Gene co-expression network

sample Hb_053337_010 Hb_053337_010 Hb_000977_070 Hb_000977_070 Hb_053337_010--Hb_000977_070 Hb_002026_110 Hb_002026_110 Hb_053337_010--Hb_002026_110 Hb_001141_330 Hb_001141_330 Hb_053337_010--Hb_001141_330 Hb_000125_120 Hb_000125_120 Hb_053337_010--Hb_000125_120 Hb_004129_130 Hb_004129_130 Hb_053337_010--Hb_004129_130 Hb_063100_010 Hb_063100_010 Hb_053337_010--Hb_063100_010 Hb_001736_040 Hb_001736_040 Hb_000977_070--Hb_001736_040 Hb_000977_070--Hb_001141_330 Hb_001488_330 Hb_001488_330 Hb_000977_070--Hb_001488_330 Hb_000827_070 Hb_000827_070 Hb_000977_070--Hb_000827_070 Hb_000152_820 Hb_000152_820 Hb_000977_070--Hb_000152_820 Hb_000317_020 Hb_000317_020 Hb_000977_070--Hb_000317_020 Hb_002026_110--Hb_001141_330 Hb_000340_510 Hb_000340_510 Hb_002026_110--Hb_000340_510 Hb_017168_010 Hb_017168_010 Hb_002026_110--Hb_017168_010 Hb_000481_010 Hb_000481_010 Hb_002026_110--Hb_000481_010 Hb_002818_040 Hb_002818_040 Hb_002026_110--Hb_002818_040 Hb_029281_010 Hb_029281_010 Hb_002026_110--Hb_029281_010 Hb_004324_280 Hb_004324_280 Hb_001141_330--Hb_004324_280 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_001141_330--Hb_000340_510 Hb_012670_140 Hb_012670_140 Hb_000125_120--Hb_012670_140 Hb_000125_120--Hb_063100_010 Hb_000244_300 Hb_000244_300 Hb_000125_120--Hb_000244_300 Hb_012799_110 Hb_012799_110 Hb_000125_120--Hb_012799_110 Hb_001720_010 Hb_001720_010 Hb_000125_120--Hb_001720_010 Hb_054865_090 Hb_054865_090 Hb_000125_120--Hb_054865_090 Hb_002904_030 Hb_002904_030 Hb_004129_130--Hb_002904_030 Hb_004734_060 Hb_004734_060 Hb_004129_130--Hb_004734_060 Hb_023827_040 Hb_023827_040 Hb_004129_130--Hb_023827_040 Hb_001516_100 Hb_001516_100 Hb_004129_130--Hb_001516_100 Hb_001584_170 Hb_001584_170 Hb_004129_130--Hb_001584_170 Hb_001274_020 Hb_001274_020 Hb_004129_130--Hb_001274_020 Hb_045046_010 Hb_045046_010 Hb_063100_010--Hb_045046_010 Hb_003878_140 Hb_003878_140 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_063100_010--Hb_001584_170 Hb_002977_010 Hb_002977_010 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.67695 1.2696 0.308909 0 1.22776 1.31219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.462637 1.45385 1.13448 0.554438 0.621536

CAGE analysis