Hb_161709_010

Information

Type -
Description -
Location Contig161709: 203-952
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161709_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_055773_010 0.2314301508 - - -
3 Hb_000879_130 0.2608867945 - - -
4 Hb_011457_110 0.2620511513 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
5 Hb_043668_010 0.2649095799 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_053337_010 0.2681177559 - - -
7 Hb_049483_010 0.2697610526 - - leucyl-tRNA synthetase, putative [Ricinus communis]
8 Hb_002843_050 0.270000216 - - scab resistance family protein [Populus trichocarpa]
9 Hb_093245_010 0.2789954407 - - -
10 Hb_000206_150 0.2811748404 - - unnamed protein product [Coffea canephora]
11 Hb_009355_040 0.2852509028 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000770_030 0.2854371555 - - -
13 Hb_002311_230 0.2858903292 - - -
14 Hb_006076_020 0.2864416402 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_002804_050 0.2889519366 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
16 Hb_007904_080 0.289324116 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
17 Hb_002192_070 0.2921487903 - - -
18 Hb_002276_050 0.2924366501 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
19 Hb_000735_120 0.2926096992 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
20 Hb_009421_030 0.2928000549 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]

Gene co-expression network

sample Hb_161709_010 Hb_161709_010 Hb_055773_010 Hb_055773_010 Hb_161709_010--Hb_055773_010 Hb_000879_130 Hb_000879_130 Hb_161709_010--Hb_000879_130 Hb_011457_110 Hb_011457_110 Hb_161709_010--Hb_011457_110 Hb_043668_010 Hb_043668_010 Hb_161709_010--Hb_043668_010 Hb_053337_010 Hb_053337_010 Hb_161709_010--Hb_053337_010 Hb_049483_010 Hb_049483_010 Hb_161709_010--Hb_049483_010 Hb_055773_010--Hb_011457_110 Hb_000614_080 Hb_000614_080 Hb_055773_010--Hb_000614_080 Hb_002843_050 Hb_002843_050 Hb_055773_010--Hb_002843_050 Hb_015401_020 Hb_015401_020 Hb_055773_010--Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_055773_010--Hb_000076_290 Hb_024399_010 Hb_024399_010 Hb_055773_010--Hb_024399_010 Hb_000879_130--Hb_043668_010 Hb_003878_120 Hb_003878_120 Hb_000879_130--Hb_003878_120 Hb_000487_100 Hb_000487_100 Hb_000879_130--Hb_000487_100 Hb_002192_070 Hb_002192_070 Hb_000879_130--Hb_002192_070 Hb_001529_060 Hb_001529_060 Hb_000879_130--Hb_001529_060 Hb_000317_150 Hb_000317_150 Hb_000879_130--Hb_000317_150 Hb_000152_890 Hb_000152_890 Hb_011457_110--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_011457_110--Hb_000367_290 Hb_017168_010 Hb_017168_010 Hb_011457_110--Hb_017168_010 Hb_011457_110--Hb_024399_010 Hb_000161_030 Hb_000161_030 Hb_011457_110--Hb_000161_030 Hb_005314_010 Hb_005314_010 Hb_011457_110--Hb_005314_010 Hb_043668_010--Hb_000317_150 Hb_002349_050 Hb_002349_050 Hb_043668_010--Hb_002349_050 Hb_007885_070 Hb_007885_070 Hb_043668_010--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_043668_010--Hb_000320_380 Hb_003126_030 Hb_003126_030 Hb_043668_010--Hb_003126_030 Hb_000313_340 Hb_000313_340 Hb_043668_010--Hb_000313_340 Hb_000977_070 Hb_000977_070 Hb_053337_010--Hb_000977_070 Hb_002026_110 Hb_002026_110 Hb_053337_010--Hb_002026_110 Hb_001141_330 Hb_001141_330 Hb_053337_010--Hb_001141_330 Hb_000125_120 Hb_000125_120 Hb_053337_010--Hb_000125_120 Hb_004129_130 Hb_004129_130 Hb_053337_010--Hb_004129_130 Hb_063100_010 Hb_063100_010 Hb_053337_010--Hb_063100_010 Hb_007926_040 Hb_007926_040 Hb_049483_010--Hb_007926_040 Hb_007101_200 Hb_007101_200 Hb_049483_010--Hb_007101_200 Hb_022250_170 Hb_022250_170 Hb_049483_010--Hb_022250_170 Hb_000250_080 Hb_000250_080 Hb_049483_010--Hb_000250_080 Hb_008247_010 Hb_008247_010 Hb_049483_010--Hb_008247_010 Hb_007603_010 Hb_007603_010 Hb_049483_010--Hb_007603_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.358759 0.177036 0 0 0.303786 0.156809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.070458 0.124623 0.0287655 0.138028

CAGE analysis