Hb_000879_130

Information

Type -
Description -
Location Contig879: 195800-196852
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61348: 195867-199697 , PASA_asmbl_61351: 197467-198594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_130 0.0 - - -
2 Hb_043668_010 0.1376518777 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_003878_120 0.1463374213 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
4 Hb_000487_100 0.1522514498 - - PREDICTED: protein unc-45 homolog A [Jatropha curcas]
5 Hb_002192_070 0.1567511621 - - -
6 Hb_001529_060 0.1577626969 - - PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Jatropha curcas]
7 Hb_000317_150 0.1662861368 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_045046_010 0.1676335149 transcription factor TF Family: TUB hypothetical protein POPTR_0011s11070g [Populus trichocarpa]
9 Hb_000805_260 0.1676458026 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
10 Hb_000685_080 0.1696994503 - - protein binding protein, putative [Ricinus communis]
11 Hb_080147_030 0.1697875944 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X3 [Jatropha curcas]
12 Hb_003126_030 0.1704232332 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004117_030 0.1706534572 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
14 Hb_001703_130 0.1742533337 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
15 Hb_033594_020 0.17701934 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
16 Hb_063100_010 0.1786864394 - - TATA box-binding protein-associated factor [Populus trichocarpa]
17 Hb_009558_040 0.1794031479 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
18 Hb_003125_060 0.1795391618 - - PREDICTED: snurportin-1 [Jatropha curcas]
19 Hb_002387_020 0.1802143916 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
20 Hb_001009_290 0.180825078 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]

Gene co-expression network

sample Hb_000879_130 Hb_000879_130 Hb_043668_010 Hb_043668_010 Hb_000879_130--Hb_043668_010 Hb_003878_120 Hb_003878_120 Hb_000879_130--Hb_003878_120 Hb_000487_100 Hb_000487_100 Hb_000879_130--Hb_000487_100 Hb_002192_070 Hb_002192_070 Hb_000879_130--Hb_002192_070 Hb_001529_060 Hb_001529_060 Hb_000879_130--Hb_001529_060 Hb_000317_150 Hb_000317_150 Hb_000879_130--Hb_000317_150 Hb_043668_010--Hb_000317_150 Hb_002349_050 Hb_002349_050 Hb_043668_010--Hb_002349_050 Hb_007885_070 Hb_007885_070 Hb_043668_010--Hb_007885_070 Hb_000320_380 Hb_000320_380 Hb_043668_010--Hb_000320_380 Hb_003126_030 Hb_003126_030 Hb_043668_010--Hb_003126_030 Hb_000313_340 Hb_000313_340 Hb_043668_010--Hb_000313_340 Hb_000187_090 Hb_000187_090 Hb_003878_120--Hb_000187_090 Hb_000742_250 Hb_000742_250 Hb_003878_120--Hb_000742_250 Hb_006649_080 Hb_006649_080 Hb_003878_120--Hb_006649_080 Hb_000041_150 Hb_000041_150 Hb_003878_120--Hb_000041_150 Hb_000364_180 Hb_000364_180 Hb_003878_120--Hb_000364_180 Hb_153258_010 Hb_153258_010 Hb_003878_120--Hb_153258_010 Hb_003125_060 Hb_003125_060 Hb_000487_100--Hb_003125_060 Hb_080147_030 Hb_080147_030 Hb_000487_100--Hb_080147_030 Hb_000685_080 Hb_000685_080 Hb_000487_100--Hb_000685_080 Hb_005725_020 Hb_005725_020 Hb_000487_100--Hb_005725_020 Hb_000740_070 Hb_000740_070 Hb_000487_100--Hb_000740_070 Hb_005399_020 Hb_005399_020 Hb_000487_100--Hb_005399_020 Hb_000849_150 Hb_000849_150 Hb_002192_070--Hb_000849_150 Hb_003813_200 Hb_003813_200 Hb_002192_070--Hb_003813_200 Hb_000544_040 Hb_000544_040 Hb_002192_070--Hb_000544_040 Hb_000815_100 Hb_000815_100 Hb_002192_070--Hb_000815_100 Hb_000025_750 Hb_000025_750 Hb_002192_070--Hb_000025_750 Hb_002897_040 Hb_002897_040 Hb_002192_070--Hb_002897_040 Hb_009178_020 Hb_009178_020 Hb_001529_060--Hb_009178_020 Hb_001009_290 Hb_001009_290 Hb_001529_060--Hb_001009_290 Hb_001529_060--Hb_000685_080 Hb_002849_080 Hb_002849_080 Hb_001529_060--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001529_060--Hb_148209_020 Hb_001529_060--Hb_000317_150 Hb_003540_160 Hb_003540_160 Hb_000317_150--Hb_003540_160 Hb_001117_190 Hb_001117_190 Hb_000317_150--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000317_150--Hb_140049_020 Hb_000753_100 Hb_000753_100 Hb_000317_150--Hb_000753_100 Hb_005539_190 Hb_005539_190 Hb_000317_150--Hb_005539_190 Hb_000317_150--Hb_000313_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75927 2.90155 1.17569 0.0551306 4.76666 1.75951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.965748 0.569105 2.1157 0.62735 0.89893

CAGE analysis