Hb_005194_030

Information

Type -
Description -
Location Contig5194: 63435-66827
Sequence    

Annotation

kegg
ID fve:101307925
description formamidase-like
nr
ID XP_012079384.1
description PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
swissprot
ID Q50228
description Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1
trembl
ID A0A0B0NRN4
description FmdA OS=Gossypium arboreum GN=F383_15673 PE=4 SV=1
Gene Ontology
ID GO:0016811
description formamidase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46653: 63568-68179 , PASA_asmbl_46654: 64497-64898 , PASA_asmbl_46655: 65303-65523
cDNA
(Sanger)
(ID:Location)		 050_L21.ab1: 66503-66898 , 051_A04.ab1: 66250-66898

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005194_030 0.0 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
2 Hb_148392_010 0.1309955498 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_002745_010 0.1385668211 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
4 Hb_000243_380 0.1386285456 - - PREDICTED: histone H1 [Jatropha curcas]
5 Hb_001511_110 0.1407487995 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
6 Hb_029223_050 0.1485767932 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
7 Hb_003206_030 0.1502503937 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
8 Hb_002813_010 0.1504512818 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
9 Hb_003435_050 0.1504845087 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
10 Hb_002477_150 0.1562356018 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
11 Hb_144824_010 0.1565767047 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
12 Hb_000449_050 0.1566190708 - - Protein bem46, putative [Ricinus communis]
13 Hb_015026_070 0.1583727597 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
14 Hb_005946_170 0.160272899 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_002626_040 0.1617397611 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
16 Hb_124677_060 0.1627738703 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_003777_160 0.1637379085 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
18 Hb_000340_110 0.1643278018 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
19 Hb_001053_030 0.1644340396 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
20 Hb_144831_010 0.1655474651 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005194_030 Hb_005194_030 Hb_148392_010 Hb_148392_010 Hb_005194_030--Hb_148392_010 Hb_002745_010 Hb_002745_010 Hb_005194_030--Hb_002745_010 Hb_000243_380 Hb_000243_380 Hb_005194_030--Hb_000243_380 Hb_001511_110 Hb_001511_110 Hb_005194_030--Hb_001511_110 Hb_029223_050 Hb_029223_050 Hb_005194_030--Hb_029223_050 Hb_003206_030 Hb_003206_030 Hb_005194_030--Hb_003206_030 Hb_009558_040 Hb_009558_040 Hb_148392_010--Hb_009558_040 Hb_144831_010 Hb_144831_010 Hb_148392_010--Hb_144831_010 Hb_000770_030 Hb_000770_030 Hb_148392_010--Hb_000770_030 Hb_028900_010 Hb_028900_010 Hb_148392_010--Hb_028900_010 Hb_014497_090 Hb_014497_090 Hb_148392_010--Hb_014497_090 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_000243_380--Hb_001511_110 Hb_000340_110 Hb_000340_110 Hb_000243_380--Hb_000340_110 Hb_000243_380--Hb_029223_050 Hb_001053_030 Hb_001053_030 Hb_000243_380--Hb_001053_030 Hb_000243_380--Hb_002745_010 Hb_144824_010 Hb_144824_010 Hb_000243_380--Hb_144824_010 Hb_001511_110--Hb_029223_050 Hb_001511_110--Hb_000340_110 Hb_001141_370 Hb_001141_370 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_029223_050--Hb_000340_110 Hb_026198_040 Hb_026198_040 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_000181_180 Hb_000181_180 Hb_003206_030--Hb_000181_180 Hb_000421_120 Hb_000421_120 Hb_003206_030--Hb_000421_120 Hb_002813_010 Hb_002813_010 Hb_003206_030--Hb_002813_010 Hb_030565_090 Hb_030565_090 Hb_003206_030--Hb_030565_090 Hb_002477_150 Hb_002477_150 Hb_003206_030--Hb_002477_150 Hb_000865_080 Hb_000865_080 Hb_003206_030--Hb_000865_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.78498 20.31 2.06092 2.20017 13.3534 7.87643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5364 4.93122 3.04567 5.13842 6.59526

CAGE analysis