Hb_001617_020

Information

Type -
Description -
Location Contig1617: 2542-19186
Sequence    

Annotation

kegg
ID rcu:RCOM_0905040
description multidrug resistance pump, putative
nr
ID XP_002518495.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RXM6
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0905040 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001617_020 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_001160_130 0.163038073 - - Glycolipid transfer protein, putative [Ricinus communis]
3 Hb_011360_080 0.1833157121 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_000368_060 0.1884120526 - - thioredoxin H-type 6 [Hevea brasiliensis]
5 Hb_005539_240 0.1898423923 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
6 Hb_000061_300 0.1912347018 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
7 Hb_001946_320 0.2007635585 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
8 Hb_000563_550 0.201084257 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
9 Hb_013818_060 0.2043177368 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
10 Hb_000946_140 0.2062310622 - - -
11 Hb_005043_010 0.2084435212 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_010402_010 0.2084663005 - - BnaC06g23470D [Brassica napus]
13 Hb_012573_030 0.2093318562 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000865_060 0.2095967199 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
15 Hb_061802_010 0.2098888648 - - hypothetical protein VITISV_011986 [Vitis vinifera]
16 Hb_007416_270 0.2103967096 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
17 Hb_071947_010 0.2119349644 - - -
18 Hb_171554_080 0.2120465169 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
19 Hb_005188_090 0.2127224833 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
20 Hb_005463_020 0.2127299871 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]

Gene co-expression network

sample Hb_001617_020 Hb_001617_020 Hb_001160_130 Hb_001160_130 Hb_001617_020--Hb_001160_130 Hb_011360_080 Hb_011360_080 Hb_001617_020--Hb_011360_080 Hb_000368_060 Hb_000368_060 Hb_001617_020--Hb_000368_060 Hb_005539_240 Hb_005539_240 Hb_001617_020--Hb_005539_240 Hb_000061_300 Hb_000061_300 Hb_001617_020--Hb_000061_300 Hb_001946_320 Hb_001946_320 Hb_001617_020--Hb_001946_320 Hb_162275_030 Hb_162275_030 Hb_001160_130--Hb_162275_030 Hb_000260_210 Hb_000260_210 Hb_001160_130--Hb_000260_210 Hb_003687_150 Hb_003687_150 Hb_001160_130--Hb_003687_150 Hb_002119_120 Hb_002119_120 Hb_001160_130--Hb_002119_120 Hb_015057_060 Hb_015057_060 Hb_001160_130--Hb_015057_060 Hb_000329_180 Hb_000329_180 Hb_001160_130--Hb_000329_180 Hb_000477_080 Hb_000477_080 Hb_011360_080--Hb_000477_080 Hb_004429_070 Hb_004429_070 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_011360_080--Hb_000368_060 Hb_000141_030 Hb_000141_030 Hb_011360_080--Hb_000141_030 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020 Hb_000562_040 Hb_000562_040 Hb_000368_060--Hb_000562_040 Hb_000368_060--Hb_005539_240 Hb_000784_030 Hb_000784_030 Hb_000368_060--Hb_000784_030 Hb_000103_110 Hb_000103_110 Hb_000368_060--Hb_000103_110 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_001232_130 Hb_001232_130 Hb_005539_240--Hb_001232_130 Hb_008931_010 Hb_008931_010 Hb_005539_240--Hb_008931_010 Hb_005539_240--Hb_000061_300 Hb_001575_020 Hb_001575_020 Hb_005539_240--Hb_001575_020 Hb_001616_060 Hb_001616_060 Hb_005539_240--Hb_001616_060 Hb_000061_300--Hb_001575_020 Hb_000061_300--Hb_001616_060 Hb_000061_300--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000061_300--Hb_007382_150 Hb_000046_290 Hb_000046_290 Hb_000061_300--Hb_000046_290 Hb_002603_160 Hb_002603_160 Hb_000061_300--Hb_002603_160 Hb_002307_090 Hb_002307_090 Hb_001946_320--Hb_002307_090 Hb_001946_320--Hb_001232_130 Hb_010589_040 Hb_010589_040 Hb_001946_320--Hb_010589_040 Hb_000861_040 Hb_000861_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10774 0.0681086 0.0995282 0.181692 1.0123 0.662543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72765 1.24296 4.0286 0.205565 1.29537

CAGE analysis