Hb_001160_130

Information

Type -
Description -
Location Contig1160: 62237-67392
Sequence    

Annotation

kegg
ID rcu:RCOM_1168990
description Glycolipid transfer protein, putative
nr
ID XP_002528828.1
description Glycolipid transfer protein, putative [Ricinus communis]
swissprot
ID O22797
description Glycolipid transfer protein 1 OS=Arabidopsis thaliana GN=GLTP1 PE=2 SV=1
trembl
ID B9SS59
description Glycolipid transfer protein, putative OS=Ricinus communis GN=RCOM_1168990 PE=4 SV=1
Gene Ontology
ID GO:0005737
description pleckstrin homology domain family a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04927: 62600-64666 , PASA_asmbl_04928: 64848-65693 , PASA_asmbl_04930: 65849-66919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001160_130 0.0 - - Glycolipid transfer protein, putative [Ricinus communis]
2 Hb_162275_030 0.1417313829 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
3 Hb_000260_210 0.1462833793 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003687_150 0.1518515346 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
5 Hb_002119_120 0.1538704326 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
6 Hb_015057_060 0.1548190769 - - -
7 Hb_000329_180 0.1597921507 - - Auxin-induced protein X10A, putative [Ricinus communis]
8 Hb_034013_020 0.1599641687 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
9 Hb_000069_550 0.1605573818 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
10 Hb_001617_020 0.163038073 - - multidrug resistance pump, putative [Ricinus communis]
11 Hb_019516_080 0.168276239 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001096_110 0.1689105248 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_005918_030 0.1694550546 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
14 Hb_001158_050 0.1696909069 - - -
15 Hb_071947_010 0.1697582604 - - -
16 Hb_000062_340 0.171320631 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
17 Hb_000997_360 0.1725091036 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
18 Hb_001218_040 0.1741813555 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
19 Hb_000061_300 0.1743669544 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
20 Hb_004738_010 0.1756547749 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001160_130 Hb_001160_130 Hb_162275_030 Hb_162275_030 Hb_001160_130--Hb_162275_030 Hb_000260_210 Hb_000260_210 Hb_001160_130--Hb_000260_210 Hb_003687_150 Hb_003687_150 Hb_001160_130--Hb_003687_150 Hb_002119_120 Hb_002119_120 Hb_001160_130--Hb_002119_120 Hb_015057_060 Hb_015057_060 Hb_001160_130--Hb_015057_060 Hb_000329_180 Hb_000329_180 Hb_001160_130--Hb_000329_180 Hb_001006_180 Hb_001006_180 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_000300_220 Hb_000300_220 Hb_000260_210--Hb_000300_220 Hb_006472_050 Hb_006472_050 Hb_000260_210--Hb_006472_050 Hb_011457_090 Hb_011457_090 Hb_000260_210--Hb_011457_090 Hb_000260_210--Hb_000329_180 Hb_011377_050 Hb_011377_050 Hb_000260_210--Hb_011377_050 Hb_002182_030 Hb_002182_030 Hb_000260_210--Hb_002182_030 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_004738_010 Hb_004738_010 Hb_002119_120--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_002119_120--Hb_001439_170 Hb_001863_480 Hb_001863_480 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_001711_030 Hb_001711_030 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_005433_040 Hb_005433_040 Hb_015057_060--Hb_005433_040 Hb_000046_100 Hb_000046_100 Hb_015057_060--Hb_000046_100 Hb_035273_030 Hb_035273_030 Hb_015057_060--Hb_035273_030 Hb_007432_030 Hb_007432_030 Hb_015057_060--Hb_007432_030 Hb_019516_080 Hb_019516_080 Hb_015057_060--Hb_019516_080 Hb_007924_020 Hb_007924_020 Hb_015057_060--Hb_007924_020 Hb_000125_030 Hb_000125_030 Hb_000329_180--Hb_000125_030 Hb_003207_170 Hb_003207_170 Hb_000329_180--Hb_003207_170 Hb_000061_300 Hb_000061_300 Hb_000329_180--Hb_000061_300 Hb_061802_010 Hb_061802_010 Hb_000329_180--Hb_061802_010 Hb_001575_020 Hb_001575_020 Hb_000329_180--Hb_001575_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5359 1.41533 2.66014 9.55117 8.37444 6.17522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5395 19.9733 40.0901 4.84389 16.933

CAGE analysis