Hb_015057_060

Information

Type -
Description -
Location Contig15057: 50900-55137
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12681: 50889-55142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015057_060 0.0 - - -
2 Hb_005433_040 0.1135322957 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
3 Hb_000046_100 0.1186624633 - - NADH dehydrogenase, putative [Ricinus communis]
4 Hb_035273_030 0.1213413917 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
5 Hb_007432_030 0.1223677954 - - acyl-CoA thioesterase, putative [Ricinus communis]
6 Hb_019516_080 0.1339278198 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007924_020 0.136537036 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_001218_040 0.1367056422 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
9 Hb_000012_130 0.1376948477 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
10 Hb_012505_010 0.1391813054 - - mak, putative [Ricinus communis]
11 Hb_001277_070 0.1402289405 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
12 Hb_153112_030 0.1405376305 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
13 Hb_007904_260 0.143466391 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
14 Hb_000668_040 0.1440452796 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
15 Hb_022181_020 0.1450753095 - - PREDICTED: D-tyrosyl-tRNA(Tyr) deacylase isoform X1 [Jatropha curcas]
16 Hb_000345_390 0.1453645222 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
17 Hb_004934_110 0.1455652875 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
18 Hb_001616_030 0.1464078882 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
19 Hb_007140_020 0.1465114341 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
20 Hb_000111_360 0.1467307439 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015057_060 Hb_015057_060 Hb_005433_040 Hb_005433_040 Hb_015057_060--Hb_005433_040 Hb_000046_100 Hb_000046_100 Hb_015057_060--Hb_000046_100 Hb_035273_030 Hb_035273_030 Hb_015057_060--Hb_035273_030 Hb_007432_030 Hb_007432_030 Hb_015057_060--Hb_007432_030 Hb_019516_080 Hb_019516_080 Hb_015057_060--Hb_019516_080 Hb_007924_020 Hb_007924_020 Hb_015057_060--Hb_007924_020 Hb_005433_040--Hb_035273_030 Hb_001105_070 Hb_001105_070 Hb_005433_040--Hb_001105_070 Hb_009773_020 Hb_009773_020 Hb_005433_040--Hb_009773_020 Hb_001135_080 Hb_001135_080 Hb_005433_040--Hb_001135_080 Hb_065525_020 Hb_065525_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000103_320 Hb_000103_320 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080 Hb_022181_020 Hb_022181_020 Hb_035273_030--Hb_022181_020 Hb_000069_600 Hb_000069_600 Hb_035273_030--Hb_000069_600 Hb_001983_020 Hb_001983_020 Hb_035273_030--Hb_001983_020 Hb_003732_020 Hb_003732_020 Hb_035273_030--Hb_003732_020 Hb_001100_060 Hb_001100_060 Hb_035273_030--Hb_001100_060 Hb_001277_070 Hb_001277_070 Hb_007432_030--Hb_001277_070 Hb_003607_150 Hb_003607_150 Hb_007432_030--Hb_003607_150 Hb_002685_040 Hb_002685_040 Hb_007432_030--Hb_002685_040 Hb_004931_090 Hb_004931_090 Hb_007432_030--Hb_004931_090 Hb_165132_010 Hb_165132_010 Hb_007432_030--Hb_165132_010 Hb_112798_030 Hb_112798_030 Hb_007432_030--Hb_112798_030 Hb_027073_050 Hb_027073_050 Hb_019516_080--Hb_027073_050 Hb_019516_080--Hb_000103_320 Hb_001439_200 Hb_001439_200 Hb_019516_080--Hb_001439_200 Hb_003687_150 Hb_003687_150 Hb_019516_080--Hb_003687_150 Hb_019516_080--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_019516_080--Hb_000300_220 Hb_000622_040 Hb_000622_040 Hb_007924_020--Hb_000622_040 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_000429_170 Hb_000429_170 Hb_007924_020--Hb_000429_170 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.322 2.91297 6.12329 6.20593 5.17715 6.05743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.643 17.782 20.8424 5.20261 8.89616

CAGE analysis