Hb_077935_010

Information

Type -
Description -
Location Contig77935: 20898-25500
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_077935_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_011986_010 0.2564100403 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_003005_040 0.2695857799 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000460_070 0.2846144441 - - luminal binding protein [Gossypium hirsutum]
5 Hb_007054_050 0.2902683688 - - -
6 Hb_001229_020 0.2902832176 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_008326_010 0.2916989361 - - putative polyprotein [Oryza sativa Japonica Group]
8 Hb_043708_010 0.2941920286 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
9 Hb_001114_040 0.2988018165 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
10 Hb_012098_190 0.3071004847 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
11 Hb_008698_010 0.3071618365 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_172388_010 0.3125966972 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
13 Hb_000050_180 0.3130698487 - - -
14 Hb_002360_020 0.314799577 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_002534_030 0.3181582465 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_042202_050 0.3190646203 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
17 Hb_012572_020 0.3233992194 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_019656_010 0.3262905012 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_115376_010 0.3284764472 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_000837_010 0.3365316551 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_077935_010 Hb_077935_010 Hb_011986_010 Hb_011986_010 Hb_077935_010--Hb_011986_010 Hb_003005_040 Hb_003005_040 Hb_077935_010--Hb_003005_040 Hb_000460_070 Hb_000460_070 Hb_077935_010--Hb_000460_070 Hb_007054_050 Hb_007054_050 Hb_077935_010--Hb_007054_050 Hb_001229_020 Hb_001229_020 Hb_077935_010--Hb_001229_020 Hb_008326_010 Hb_008326_010 Hb_077935_010--Hb_008326_010 Hb_001114_040 Hb_001114_040 Hb_011986_010--Hb_001114_040 Hb_011986_010--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_011986_010--Hb_009150_030 Hb_000122_210 Hb_000122_210 Hb_011986_010--Hb_000122_210 Hb_063405_020 Hb_063405_020 Hb_011986_010--Hb_063405_020 Hb_181240_010 Hb_181240_010 Hb_003005_040--Hb_181240_010 Hb_004324_080 Hb_004324_080 Hb_003005_040--Hb_004324_080 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_004734_050 Hb_004734_050 Hb_003005_040--Hb_004734_050 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_000460_070--Hb_001229_020 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_000460_070--Hb_007054_050 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_007054_050--Hb_008698_010 Hb_007054_050--Hb_000683_080 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_001229_020--Hb_008698_010 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030 Hb_115376_010 Hb_115376_010 Hb_008326_010--Hb_115376_010 Hb_002599_040 Hb_002599_040 Hb_008326_010--Hb_002599_040 Hb_008326_010--Hb_003005_040 Hb_016748_010 Hb_016748_010 Hb_008326_010--Hb_016748_010 Hb_008326_010--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0074832 0 0.00334118 0.0173345 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0103116 0.01623 0.0311889 0.00642702 0.0870043

CAGE analysis