Hb_016748_010

Information

Type -
Description -
Location Contig16748: 30410-34498
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016748_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_016734_030 0.2442590111 - - -
3 Hb_008326_010 0.2843715637 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_000120_040 0.3078294825 - - -
5 Hb_006420_050 0.3129660803 - - helicase, putative [Ricinus communis]
6 Hb_000111_110 0.3133208298 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_000122_210 0.3137390196 - - -
8 Hb_011986_010 0.3174144402 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_093824_010 0.3191196873 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
10 Hb_007054_050 0.3191501913 - - -
11 Hb_015978_050 0.3208977324 - - -
12 Hb_031091_030 0.3278281109 - - hypothetical protein OsI_25921 [Oryza sativa Indica Group]
13 Hb_044187_010 0.3382600112 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
14 Hb_000619_030 0.3388264737 - - unnamed protein product [Vitis vinifera]
15 Hb_185735_010 0.3433585213 - - Heat shock factor protein HSF8, putative [Ricinus communis]
16 Hb_002235_100 0.3446215921 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
17 Hb_130016_010 0.345574134 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001114_040 0.3457017152 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
19 Hb_001723_090 0.3485084359 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
20 Hb_009150_030 0.3500579009 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]

Gene co-expression network

sample Hb_016748_010 Hb_016748_010 Hb_016734_030 Hb_016734_030 Hb_016748_010--Hb_016734_030 Hb_008326_010 Hb_008326_010 Hb_016748_010--Hb_008326_010 Hb_000120_040 Hb_000120_040 Hb_016748_010--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_016748_010--Hb_006420_050 Hb_000111_110 Hb_000111_110 Hb_016748_010--Hb_000111_110 Hb_000122_210 Hb_000122_210 Hb_016748_010--Hb_000122_210 Hb_015978_050 Hb_015978_050 Hb_016734_030--Hb_015978_050 Hb_093824_010 Hb_093824_010 Hb_016734_030--Hb_093824_010 Hb_001188_120 Hb_001188_120 Hb_016734_030--Hb_001188_120 Hb_000487_190 Hb_000487_190 Hb_016734_030--Hb_000487_190 Hb_016734_030--Hb_000111_110 Hb_115376_010 Hb_115376_010 Hb_008326_010--Hb_115376_010 Hb_002599_040 Hb_002599_040 Hb_008326_010--Hb_002599_040 Hb_003005_040 Hb_003005_040 Hb_008326_010--Hb_003005_040 Hb_077935_010 Hb_077935_010 Hb_008326_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_008326_010--Hb_007054_050 Hb_000120_040--Hb_006420_050 Hb_001214_180 Hb_001214_180 Hb_000120_040--Hb_001214_180 Hb_000417_200 Hb_000417_200 Hb_000120_040--Hb_000417_200 Hb_005237_050 Hb_005237_050 Hb_000120_040--Hb_005237_050 Hb_000120_040--Hb_000122_210 Hb_009778_060 Hb_009778_060 Hb_000120_040--Hb_009778_060 Hb_006420_050--Hb_005237_050 Hb_000130_220 Hb_000130_220 Hb_006420_050--Hb_000130_220 Hb_003020_220 Hb_003020_220 Hb_006420_050--Hb_003020_220 Hb_005116_050 Hb_005116_050 Hb_006420_050--Hb_005116_050 Hb_002988_040 Hb_002988_040 Hb_006420_050--Hb_002988_040 Hb_001214_050 Hb_001214_050 Hb_000111_110--Hb_001214_050 Hb_000676_200 Hb_000676_200 Hb_000111_110--Hb_000676_200 Hb_002235_100 Hb_002235_100 Hb_000111_110--Hb_002235_100 Hb_002631_250 Hb_002631_250 Hb_000111_110--Hb_002631_250 Hb_000010_290 Hb_000010_290 Hb_000111_110--Hb_000010_290 Hb_020025_010 Hb_020025_010 Hb_000111_110--Hb_020025_010 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0156703 0.0238853 0.00376779 0 0.0139082 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0431673 0.0165788 0.030777 0.0554941

CAGE analysis