Hb_000487_190

Information

Type -
Description -
Location Contig487: 191571-192101
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45003: 186356-190884 , PASA_asmbl_45009: 191896-195180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_190 0.0 - - -
2 Hb_016734_030 0.2879976956 - - -
3 Hb_002154_080 0.2914279444 - - hypothetical protein MIMGU_mgv1a018017mg, partial [Erythranthe guttata]
4 Hb_108557_020 0.3015898851 transcription factor TF Family: B3 Zeamatin precursor, putative [Ricinus communis]
5 Hb_000812_030 0.3092694481 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_000331_340 0.3102837453 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
7 Hb_156850_130 0.3179504854 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002799_130 0.318121871 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
9 Hb_000665_150 0.3244393805 - - heparanase, putative [Ricinus communis]
10 Hb_012528_030 0.324742001 - - -
11 Hb_000946_080 0.3264045212 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Prunus mume]
12 Hb_152540_010 0.3275469029 - - -
13 Hb_004254_100 0.3284120346 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
14 Hb_028048_020 0.3297409074 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_000418_090 0.3313197339 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_001828_120 0.3328132566 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
17 Hb_003929_220 0.3343227462 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000836_540 0.3347347496 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
19 Hb_003605_120 0.3359696419 - - hypothetical protein POPTR_0013s12060g [Populus trichocarpa]
20 Hb_010366_010 0.3363689103 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_000487_190 Hb_000487_190 Hb_016734_030 Hb_016734_030 Hb_000487_190--Hb_016734_030 Hb_002154_080 Hb_002154_080 Hb_000487_190--Hb_002154_080 Hb_108557_020 Hb_108557_020 Hb_000487_190--Hb_108557_020 Hb_000812_030 Hb_000812_030 Hb_000487_190--Hb_000812_030 Hb_000331_340 Hb_000331_340 Hb_000487_190--Hb_000331_340 Hb_156850_130 Hb_156850_130 Hb_000487_190--Hb_156850_130 Hb_015978_050 Hb_015978_050 Hb_016734_030--Hb_015978_050 Hb_016748_010 Hb_016748_010 Hb_016734_030--Hb_016748_010 Hb_093824_010 Hb_093824_010 Hb_016734_030--Hb_093824_010 Hb_001188_120 Hb_001188_120 Hb_016734_030--Hb_001188_120 Hb_000111_110 Hb_000111_110 Hb_016734_030--Hb_000111_110 Hb_000959_050 Hb_000959_050 Hb_002154_080--Hb_000959_050 Hb_001863_410 Hb_001863_410 Hb_002154_080--Hb_001863_410 Hb_142522_040 Hb_142522_040 Hb_002154_080--Hb_142522_040 Hb_002154_080--Hb_000812_030 Hb_000028_270 Hb_000028_270 Hb_002154_080--Hb_000028_270 Hb_000527_120 Hb_000527_120 Hb_002154_080--Hb_000527_120 Hb_108557_020--Hb_156850_130 Hb_002400_080 Hb_002400_080 Hb_108557_020--Hb_002400_080 Hb_001711_040 Hb_001711_040 Hb_108557_020--Hb_001711_040 Hb_002960_070 Hb_002960_070 Hb_108557_020--Hb_002960_070 Hb_001840_110 Hb_001840_110 Hb_108557_020--Hb_001840_110 Hb_005831_010 Hb_005831_010 Hb_108557_020--Hb_005831_010 Hb_000032_020 Hb_000032_020 Hb_000812_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_000812_030--Hb_010921_020 Hb_001229_030 Hb_001229_030 Hb_000812_030--Hb_001229_030 Hb_002110_110 Hb_002110_110 Hb_000812_030--Hb_002110_110 Hb_003106_250 Hb_003106_250 Hb_000812_030--Hb_003106_250 Hb_005183_140 Hb_005183_140 Hb_000812_030--Hb_005183_140 Hb_002447_050 Hb_002447_050 Hb_000331_340--Hb_002447_050 Hb_003683_030 Hb_003683_030 Hb_000331_340--Hb_003683_030 Hb_000302_190 Hb_000302_190 Hb_000331_340--Hb_000302_190 Hb_003529_140 Hb_003529_140 Hb_000331_340--Hb_003529_140 Hb_004871_010 Hb_004871_010 Hb_000331_340--Hb_004871_010 Hb_000418_090 Hb_000418_090 Hb_000331_340--Hb_000418_090 Hb_156850_130--Hb_002960_070 Hb_156850_130--Hb_002400_080 Hb_003417_070 Hb_003417_070 Hb_156850_130--Hb_003417_070 Hb_032260_110 Hb_032260_110 Hb_156850_130--Hb_032260_110 Hb_012090_020 Hb_012090_020 Hb_156850_130--Hb_012090_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.33589 0.373292 0.468675 0 0.254459 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.120433 0 0.151452 0.662744

CAGE analysis