Hb_093824_010

Information

Type -
Description -
Location Contig93824: 1766-4173
Sequence    

Annotation

kegg
ID pmum:103326132
description uncharacterized LOC103326132
nr
ID XP_008226562.1
description PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID A0A061DN37
description Uncharacterized protein OS=Theobroma cacao GN=TCM_002794 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093824_010 0.0 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
2 Hb_000094_050 0.2137483416 - - -
3 Hb_016734_030 0.2661464243 - - -
4 Hb_003645_050 0.2682491834 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000495_060 0.2713196629 - - Osmotin precursor, putative [Ricinus communis]
6 Hb_001871_030 0.2735265261 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006717_080 0.2747854208 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
8 Hb_011892_010 0.2922856732 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000060_070 0.2930428947 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
10 Hb_000100_110 0.2979739175 - - -
11 Hb_003362_020 0.2993397657 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
12 Hb_003540_170 0.3036025014 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
13 Hb_000123_340 0.3037348254 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
14 Hb_000965_010 0.3040571864 - - hypothetical protein VITISV_016917 [Vitis vinifera]
15 Hb_006040_150 0.3067564784 - - -
16 Hb_000803_230 0.3069676846 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_127552_050 0.3083363625 - - hypothetical protein VITISV_030752 [Vitis vinifera]
18 Hb_006810_020 0.3096591861 - - PREDICTED: NADPH:quinone oxidoreductase-like [Jatropha curcas]
19 Hb_004520_010 0.313042796 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
20 Hb_003927_020 0.3134075516 - - PREDICTED: uncharacterized protein LOC105782546 [Gossypium raimondii]

Gene co-expression network

sample Hb_093824_010 Hb_093824_010 Hb_000094_050 Hb_000094_050 Hb_093824_010--Hb_000094_050 Hb_016734_030 Hb_016734_030 Hb_093824_010--Hb_016734_030 Hb_003645_050 Hb_003645_050 Hb_093824_010--Hb_003645_050 Hb_000495_060 Hb_000495_060 Hb_093824_010--Hb_000495_060 Hb_001871_030 Hb_001871_030 Hb_093824_010--Hb_001871_030 Hb_006717_080 Hb_006717_080 Hb_093824_010--Hb_006717_080 Hb_002000_120 Hb_002000_120 Hb_000094_050--Hb_002000_120 Hb_000094_050--Hb_003645_050 Hb_006916_180 Hb_006916_180 Hb_000094_050--Hb_006916_180 Hb_000959_050 Hb_000959_050 Hb_000094_050--Hb_000959_050 Hb_010691_010 Hb_010691_010 Hb_000094_050--Hb_010691_010 Hb_015978_050 Hb_015978_050 Hb_016734_030--Hb_015978_050 Hb_016748_010 Hb_016748_010 Hb_016734_030--Hb_016748_010 Hb_001188_120 Hb_001188_120 Hb_016734_030--Hb_001188_120 Hb_000487_190 Hb_000487_190 Hb_016734_030--Hb_000487_190 Hb_000111_110 Hb_000111_110 Hb_016734_030--Hb_000111_110 Hb_000060_070 Hb_000060_070 Hb_003645_050--Hb_000060_070 Hb_003645_050--Hb_006916_180 Hb_001355_050 Hb_001355_050 Hb_003645_050--Hb_001355_050 Hb_008642_050 Hb_008642_050 Hb_003645_050--Hb_008642_050 Hb_003645_050--Hb_002000_120 Hb_000965_010 Hb_000965_010 Hb_000495_060--Hb_000965_010 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_000832_010 Hb_000832_010 Hb_001871_030--Hb_000832_010 Hb_003927_020 Hb_003927_020 Hb_001871_030--Hb_003927_020 Hb_000167_070 Hb_000167_070 Hb_001871_030--Hb_000167_070 Hb_006992_030 Hb_006992_030 Hb_001871_030--Hb_006992_030 Hb_005765_020 Hb_005765_020 Hb_001871_030--Hb_005765_020 Hb_007885_110 Hb_007885_110 Hb_001871_030--Hb_007885_110 Hb_000527_120 Hb_000527_120 Hb_006717_080--Hb_000527_120 Hb_012707_020 Hb_012707_020 Hb_006717_080--Hb_012707_020 Hb_000300_310 Hb_000300_310 Hb_006717_080--Hb_000300_310 Hb_000014_190 Hb_000014_190 Hb_006717_080--Hb_000014_190 Hb_078477_060 Hb_078477_060 Hb_006717_080--Hb_078477_060 Hb_000173_110 Hb_000173_110 Hb_006717_080--Hb_000173_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0106651 0.0176158 0.00791859 0 0.0106812 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0190798 0 0.0379783 0.120729

CAGE analysis